barSeed - Barley Seed Development Database

Probe CUST_8018_PI390587928

Source Contig U35_24611

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8018_PI390587928	Hv_44K_v2	GAGTTGGACTTCTAGATTTTTTGCAATTTTTCCACTTTGCCCAGAGACACTGTATTATTT	792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361285	4697	2e-24	4602 - 4661	100	60 / 60	plus	ABC01971 ABC19696
MLOC	MLOC_13559.1	671	2e-24	509 - 568	100	60 / 60	plus	ABC19696
MLOC	MLOC_13559.3	1552	2e-24	669 - 728	100	60 / 60	plus	ABC19696
JLOC1	JLOC1_9189.1	831	8e-25	509 - 568	100	60 / 60	plus
Harvest21	ABC19696	899	3e-25	48 - 107	100	60 / 60	minus	ABC19696
Harvest35	U35_24611	899	3e-25	793 - 852	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_24611 899 Hv_44K_v2
GGCGAAATCCACACCTATTGCCTTATGCAAATGATACCTCGGATGGTGATGCTTTTGTCG
ATTCACCAACCGGCAGTCCATCACCGTGGAACTCTCATTCGCTGGATCAAATAACAGATG
CTGATGTTTCCCGGATGAGAAAAAAGTGGGGCAGTGCTCAGTTGCCTTTTGGTGGTGCCA
ATGCATCTCAACAGCCACGTAAAGATGTCCCCAAAGGGTTTAAGAAGCTGCTGAAATTTG
GGAGGAAGAATAGGGGTGGTGATGGTTTAGTAAATGACTGGGTTTCTGCTTCAACTGCCT
CAGAATGTGACGATGATATGGAAGACGGCCGGGATCTAGCAATAGGATCCTCTGATGATT
TCAGAAAGTCAAGAATGGGCTATCTTTCTTCATATGATGGTTTTGTTGAGAGTGAGGTTT
TCACTGAACAAGAACAATCGCTGCGCAGCTCCATTCCAAACCCCCCTGCAAATTTTAGAC
TGAGGGAGGACCAACTGACTGGTAGCTCAATTAAAGCACCACGTTCGTTCTTCTCCCTGT
CGACATTCCGGAGCAAAGGAGGCGATGCTAGGCTGAGGTGACCCTCAAGCACCAGAGCTG
GATTGTATAAAATTTCTTCTGGAACTAGGTAAAGATATCAAATTTTCATGGATGGTACGC
GGCACTGCTAGCTTTTCATATATAAATACATATCCTGTATCTATGATAATTCTTATAAGC
TGCCAGTTAAGCGTTTCCACTGTTGTTGTTTGCTAATTCTTTTTCTTTATCTTTTTTTTC
ATCTCTTGTGTAGAGTTGGACTTCTAGATTTTTTGCAATTTTTCCACTTTGCCCAGAGAC
ACTGTATTATTTTTATTATTTTTGTGATATGCTTGTATCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42410.1	1366	4e-96	protein\|expressed protein
Brachypodium v1_2	Bradi1g20840.1	1364	5e-103
Arabidopsis v10	None