barSeed - Barley Seed Development Database

Probe CUST_8016_PI390587928

Source Contig U35_24613

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8016_PI390587928	Hv_44K_v2	GTAAGGGTTGCTAGTAAGTTTCCGATAAAATTAATGCATCTTAGATAGGTTTCTGGCATA	726	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.330	1.354	1.125	1.006	0.447	0.483
Raw	233.502	369.715	267.911	371.197	59.347	68.578

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6568.6	2241	1e-23	2105 - 2162	100	58 / 58	plus
JLOC1	JLOC1_6568.5	2233	1e-23	2097 - 2154	100	58 / 58	plus
JLOC1	JLOC1_6568.4	2236	1e-23	2100 - 2157	100	58 / 58	plus
JLOC1	JLOC1_6568.3	2233	1e-23	2097 - 2154	100	58 / 58	plus
JLOC1	JLOC1_6568.2	2138	1e-23	2002 - 2059	100	58 / 58	plus
JLOC1	JLOC1_6568.1	2135	1e-23	1999 - 2056	100	58 / 58	plus
Harvest21	ABC48234	507	3e-25	86 - 145	100	60 / 60	minus	ABC48234
Harvest35	U35_24613	871	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (871 bp)

>U35_24613 871 Hv_44K_v2
CATCAACTATGCAGAGTCAACAGAATTTACAGTATGATGATGTCTGCAAAGAAGTTGCTT
CTGAGTTATACGCACGGTTAAGAGAAGCAGAGCTGTCTGGAATTCCTCTGTGGAGGACAG
TTCTTGATCCTGGCATTGGGTTCTCCAAGGAACCCAAACATAATCTTGAAATACTCAACG
GCTTGAGGTCCATTAGAAAAGAGATGGGTAAAGTGAGTTTAGCTGCTTCACATGTGCCCA
TATTACTTGGGCTCTCGAGAAAAAGTTTCTTAGGTGAAATATGCAATCGTGCCGATCCAG
TTGAGAGAGATGCCGCTACTGTTGCTGGTAATGCAATAGGGATTATGAATGGTGCTAACA
TATTAAGGGTTCATAATGTTGGATATAGCGTGGATGGTGCACAGATCGCTGATGCATTGC
GCATGGCCAAACCAAAAAGTATACCGCCAGCAGAGAATTGAGACTATTCTCCAGTTTTGT
ACAAGAAAATGGTGATATTGACTTGTAGAGTACTCCCTCTGTCCCACAAGACGTTTTGTG
ACATTGAGTAATTGCTAACACACCATTGGTGTATCATCACTTGAGGCAATAAAAGCATGT
GTATAACTGTTGGAGTAAACCAAAGATGTACATTGTTTCTTGTGATGGCTCCTTCCTAGA
ATCTTCAAGGAAGTAAAAGGTAAACTCAACTTAGATCATCCGGAGAGTAACAAAGGAAAA
CAAGTTGTAAGGGTTGCTAGTAAGTTTCCGATAAAATTAATGCATCTTAGATAGGTTTCT
GGCATAATTTCTTATGCAACACTCTTATAATTTATTTTAATTCGATAAATTCCAAAGGAT
TTTGACATTTTTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42632.3	523	4e-62	protein\|folic acid synthesis protein, putative, expressed
Brachypodium v1_2	Bradi1g21050.1	536	1e-65
Arabidopsis v10	AT4G30000.2	561	6e-52	Dihydropterin pyrophosphokinase / Dihydropteroate synthase \| chr4:14670417-14672397 REVERSE LENGTH=561