barSeed - Barley Seed Development Database

Probe CUST_8012_PI390587928

Source Contig U35_24617

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8012_PI390587928	Hv_44K_v2	TTTCTCGGCAAAGGTGGAACAAACAAATCTTCAATGTGCTTGCAATGCTTAATCATAAGT	721	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.674	1.561	1.107	0.695	0.568	0.506
Raw	20.470	28.384	18.931	17.467	2.981	3.076

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252850.1	1625	2e-24	1546 - 1605	100	60 / 60	plus	ABC19303
JLOC1	JLOC1_15270.2	951	8e-25	884 - 943	100	60 / 60	plus
JLOC1	JLOC1_15270.1	971	8e-25	904 - 963	100	60 / 60	plus
Harvest21	ABC19303	781	3e-25	1 - 60	100	60 / 60	minus	ABC19303
Harvest35	U35_24617	781	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (781 bp)

>U35_24617 781 Hv_44K_v2
TTTATGGGTTGTGAAGACTAGACTACAAACACAAGGGATGAGGCCTGGTGTTGTGCCTTA
TACGAGCATCTTATCCGCGTTACGTAGGATTGCAGCAGAAGAAGGTCTCCGTGGATTGTA
CAGTGGTCTTCTTCCTTCTTTAGCTGGGGTTACTCATGTAGCCATCCAGTTCCCAGTATA
CGAGAAGGCGAAGCTGTACATTGCAAAAAGAGACAATACTACAGTTGATAAGCTTGGCCC
TGGTCAGTTAGCAATTTGTTCCTCAGGATCCAAAATAACAGCCTCGCTCATAACATACCC
TCATGAGGTTGTAAGATCTAAGTTGCAAGAACAAGGCCGTGGTCCCCATGGTGCTATACG
GTATATAGGTGTAACGGACTGTATAAAGCAAGTGTTACAGAAGGAGGGGATTGCTGGATT
CTACCGAGGTTGTGCTACAAATTTGTTGCGAACAACGCCGAACGCTGTCATTACTTTCAC
TAGTTATGAGATGATCAATCGACTCATGCACAAGCTCCTGCCCTCCTAATTGAAAGGTGG
AACTTTATTGCGGTCCCTCCGCCTTATTTTGTCTTTTAGGGCTTGTTAAGTTGTGCCCTC
AGCAGAACCCCCCTACTTGGTGTCGTGCTACCTTGTGTGTGTGTATGTGTCTGGATTTGG
TCTTATGTTTGTACTCTTGGTATGATGGTTTGCTTTATATATATAAAGCGGGGTGAAAGA
TTTTCTCGGCAAAGGTGGAACAAACAAATCTTCAATGTGCTTGCAATGCTTAATCATAAG
T

Homology of Contig U35_24617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g32980.1	317	3e-103	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g28120.1	341	1e-74
Arabidopsis v10	AT1G25380.1	363	5e-77	\| Symbols: ATNDT2, NDT2 \| NAD+ transporter 2 \| chr1:8903726-8905818 FORWARD LENGTH=363