barSeed - Barley Seed Development Database

Probe CUST_8004_PI390587928

Source Contig U35_12649

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8004_PI390587928	Hv_44K_v2	GGTGTGCCAAGCAATGCAATGTACCTTTGTTGTTGTATGTATGCCAATCTCATAAATTCA	467	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.625	1.912	2.208	1.549	0.509	0.579
Raw	204.158	991.465	977.857	1084.126	124.524	153.488

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354069	2012	2e-24	1938 - 1997	100	60 / 60	plus	ABC35092
MLOC	MLOC_4559.2	2432	2e-24	2299 - 2358	100	60 / 60	plus	ABC35092
MLOC	MLOC_4559.3	2188	2e-24	2055 - 2114	100	60 / 60	plus	ABC35092
JLOC1	JLOC1_2854.2	1882	8e-25	1727 - 1786	100	60 / 60	plus
JLOC1	JLOC1_2854.1	2254	8e-25	2099 - 2158	100	60 / 60	plus
Harvest21	ABC35092	568	3e-25	39 - 98	100	60 / 60	minus	ABC35092
Harvest35	U35_12649	565	3e-25	468 - 527	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_12649 565 Hv_44K_v2
TGGTTACAGCTACCTGGAGGGCGGAAGAGAGGACCGGTCAAGGACAGGCGAGGTCGCTGT
CGGGTTCGAAGAGAAGAGCGACAACAGATACTGCGGGGGCAGAGACATGGGGACAAGTAT
CGGCGGTGAAAGGAGGAGCAGCTGCTGCGCCGAGAGCTGGGATCACCTTGATCCGTTCAT
GGCGCGACGATGGGCGAAGCATTTCAACGTGTACAGATCCTGAGAGTGATTAAAGAGGTG
GAGGAGCTTGATGGTTGCCAGTTTGACAAAAATGTTATTCTTGTTGGTTCTTTCTTTGCA
TTCTTGCAAGCATTTCAGGGAAGTGTTTGTTATTCTTTTTCTTGGCTTTTGCTGAGGGTT
CGGAGTCCATGTGTGCAGAGGCTTTTCTGTCCTCCAGTGTGTTTGTGTGTATGAATCGAA
TCAGAAAGCTCCAGGTCGGAAGATTATGAATGTGAATGCCATCAAGTGGTGTGCCAAGCA
ATGCAATGTACCTTTGTTGTTGTATGTATGCCAATCTCATAAATTCATAATTCAAATTTG
AGAACATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_12649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None