barSeed - Barley Seed Development Database

Probe CUST_7999_PI390587928

Source Contig U35_24624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7999_PI390587928	Hv_44K_v2	CATGTAAAATTGCTGCAAACTTGGCCGTTAAGCGAGATCGCTCATAAGCTTTCCTTTAAA	545	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.106	1.687	1.154	0.900	0.393	0.479
Raw	1760.810	4079.157	2515.723	3045.063	479.486	620.788

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375442	2104	3e-21	1913 - 1969	98	56 / 57	plus	ABC33266 ABC41818
Harvest21	ABC33266	410	3e-25	337 - 396	100	60 / 60	plus	ABC33266
Harvest35	U35_24624	619	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_24624 619 Hv_44K_v2
ATTTTGGAACTGTACATACTTGTATGCATGAATAGACTAGAAGATAAGGAGCAAAAGTCG
TACAACTTCAACACGATAATAAAAGAATACAAATCTATTCAGGATGCCTACAAAACTTCC
GATAAGTACGCAACCACTGTTTGCTTCAGGGCATTTGAACATCTTTTGGATCGCGAGTTG
ATCACCTTCGCGGACACCAAAGGGAGAAATGTGGCGCTTGAATATCGGCCCGTCAAACTT
CTGATATCTTCTCGCGAGCTCGCACAATCCCTCAACTTAAACACCACTTGCCCCGCTGTA
CTGCAAAAGCTGCTTGACCGTGAAAGATACATGTAGAAGTTCCTGTGTGTTTGCTGAAAC
TGTGACGCTGCTTCACTGGTTCCCAAGTAATGGTTTAGAAAGCTGCAAAATTACAAACTT
AAATCGTAGACTCATGCAACAATGACTTGGCCAGTCGTTTGCAAGTATGGTTCTCGGTAT
TAGTGAGCAGAGATCATGTGAGGTAGTAGTGGGCGCTTCATCAGTTGGTGCTGACGGGAT
GTGAACATGTAAAATTGCTGCAAACTTGGCCGTTAAGCGAGATCGCTCATAAGCTTTCCT
TTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49010.2	426	4e-61	protein\|ORC4 - Putative origin recognition complex subunit 4, expressed
Brachypodium v1_2	Bradi2g46720.1	425	2e-66
Arabidopsis v10	None