barSeed - Barley Seed Development Database

Probe CUST_7996_PI390587928

Source Contig U35_24627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7996_PI390587928	Hv_44K_v2	ATCATAGAGTACTCAGCCATCATCCTTTGGGTACTAGATAATGCTGATCTCGTGGCCGTA	484	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.831	0.625	1.488	1.954	1.036	0.949
Raw	44.239	46.550	109.092	219.513	41.914	41.949

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64294.1	2006	2e-24	1352 - 1411	100	60 / 60	minus	ABC09045 ABC39972
JLOC1	JLOC1_42205.1	2126	8e-25	587 - 646	100	60 / 60	plus
Harvest21	ABC21122	696	3e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_24627	696	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_24627 696 Hv_44K_v2
CGTATTCGACTCCTNCTCCACCGCCCCCTCCCCCGCCCCCTGGATTGGGAGCCAAGAAAA
CCAGACCATAGATCCTCCGAGACCAGCGCTTCCGATCCATTCCGCCTCCCCCGCCTCCTC
CCCCGCCGCAGCCCTGCACCTGGAGGCTGCTTCTCTTCTCTCGCCGGGCGCTCCCGCAAG
TCGCAGCCAAGAAATGGCTCGACCTGAGGAAAACGCGAAATTCCCCAGCTGTGATGCCTA
CTTTGACACTATCCAGTCCAAGAAGAAGCTCCCACTGGCTTTGCAAGAGTCGCTGACCGC
TGCCTTTGCTCAGATCCCAGTCGCATCGTTTCCTGATGTTCCTAGTGGCCGAGTGACTGA
AATTCCTGGAGAAACTTCTGTTCTTGATGCTGTTAGAATATTATCTGAGCACAACATAAG
GGCAGCGCCAGTGCTTAACCCTGAACCTGGGGCTCCGGCTGATTGGCAAGGGAGGTATCT
TGGCATCATAGAGTACTCAGCCATCATCCTTTGGGTACTAGATAATGCTGATCTCGTGGC
CGTAGCTCTGTCAGCTGGATCAGCAACTGCTGCAGGAGTCGGAATAGGCGCTGTTGGTGC
AGTGGGCGTGGCTGCATTAGGTGCAACTGGCCCGGCAGCTGTCGCTGGGTTGACTGCTGC
TGCAGTAGGTGCCGCTGTTGCTGGCGGGTTAACTGC

Homology of Contig U35_24627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40420.1	451	6e-62	protein\|CBS domain containing membrane protein, putative, expressed
Brachypodium v1_2	Bradi2g42080.1	453	5e-67
Arabidopsis v10	None