barSeed - Barley Seed Development Database

Probe CUST_7994_PI390587928

Source Contig U35_24629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7994_PI390587928	Hv_44K_v2	TTCGAGTTAGGCAGTCTGGATCTTGCAGAAAAGGTGTAGCTAGCTAGGATCCTTTTGCTT	127	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_24253.1	2178	2e-24	195 - 254	100	60 / 60	plus	ABC14132 ABC14133
JLOC1	JLOC1_16687.1	2161	8e-25	179 - 238	100	60 / 60	plus
Harvest21	ABC34738	612	3e-25	94 - 153	100	60 / 60	plus
Harvest35	U35_24629	646	3e-25	128 - 187	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_24629 646 Hv_44K_v2
GTCCTCTCCAGCTTCTCTTCTTCCTCTCGGCCTCTTTCTCCCCTCCTCATCCCCTTCCAC
TTCTTCGGCTTCTTCCTCCTCTTCATTTCACTTCTTCGGCTTGCTCTTCTTGCCCAAGTT
ACCATCCTTCGAGTTAGGCAGTCTGGATCTTGCAGAAAAGGTGTAGCTAGCTAGGATCCT
TTTGCTTCCTCCGAGCTGGGAGAGAGAAAACAGAGCGGAGAAGAGAGAGAGAGATACACG
GGTACCGGAGGTTGACCGAGCCAAAGTGGTTTGGAGCTCCTGGCTGGGCCTTTTTCTTTT
GGCGACGACATGGCGAAGATCCACTTCTACCTCCTCTTGCTGCTGGCCGCCGCCGAAGCT
ATTCACGCTGAAGATGGGGCGTACATCGGCGTCAACATCGGCACGGCCATGTCATCGGTG
CCGGCTGCCACGCAGATCACGACGCTGCTCCGCTCGCAGAACATCCGGCACATCCGCCTT
TACGACGCCGACCCGGGGATGCTGTCGGCGCTGGCCAACACCGGCATCCGCGTCATCATC
TCCGTCCCCAACGAGCAGCTCCTCGCCATCGGCAACTCCAACGCCACGGCGGCCAAGTGG
GTGGCGCGGAACGTGGCGGCACACTACCCGTCCGTGAACATCACGG

Homology of Contig U35_24629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g69610.1	499	5e-51
Arabidopsis v10	None