barSeed - Barley Seed Development Database

Probe CUST_7992_PI390587928

Source Contig U35_36601

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7992_PI390587928	Hv_44K_v2	TGGTTTTTCGCTTACTATTCGACATCACGACTATAAATTAGATGGTCACCGGACCCAGGC	297	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.243	1.590	2.030	0.708	0.074	0.058
Raw	241.976	280.353	297.435	162.249	4.627	3.925

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30868.1	2277	7e-23	198 - 257	98	59 / 60	plus	None
JLOC1	JLOC1_20362.1	1114	4e-23	190 - 249	98	59 / 60	plus
Harvest21	ABC31718	648	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_36601	648	3e-25	298 - 357	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_36601 648 Hv_44K_v2
GGTCGCCCTCCCCGACCGGGTGCGTATTCCCCTCGACTCCGGCGTCATCACGTGCCCCAT
GATGATCCGCGCAGCCGTCATGTCCGCCGCGCCGCCGTCTGCCGCCTGCTTCGTCGCCGC
CATAACATCCAGCCAAACCAACATGGCGTTCTGGCGCCCGGGCATGGACTGCTGGTTGTC
GGCGCCGGTGGGGCCGACCCCGCGAAACGCCCAAGACCTCACTTACCACGACGGATGGTT
CTGCGCCGTCGACTCTGATGATGGCCTCGTCTCCTACAAGCCGGAAATCGGCCCTGATGG
TTTTTCGCTTACTATTCGACATCACGACTATAAATTAGATGGTCACCGGACCCAGGCCGC
GCTCGGGGAGATCGTCTCCCGCTACCTCCTGCCATCCGCCTCCGGTGCCGATCTGCTGAT
GGTGAAAAGGTATGTCGCGCCGGCGAAAGGCGGCACCTGGAAGTTCCAGGTCTACAGGCT
GCAGGAGGGACAGCCGGCTTCCTGGGGCTTGTACCAGATGACTGGGCAGGTGCTCTTCGT
TGGCCGGGCCTGTTCCAAGGCCTTCGACATGGGGCACGCTGGCAGCCCGGGCTACATCTA
CTTCCTGGACGACGTTTACCCTTGGCGGGCCACATAGTGTCCTCCAGC

Homology of Contig U35_36601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None