barSeed - Barley Seed Development Database

Probe CUST_7991_PI390587928

Source Contig U35_36602

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7991_PI390587928	Hv_44K_v2	CTTGCAGGCTGTTTTGGAACTCATTTCATCTATATGAATTCTCAGCTATTTAGACTGCTA	16	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.759	2.196	1.899	0.624	0.080	0.029
Raw	1121.022	1442.499	1054.737	550.213	25.003	9.222

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30868.1	2277	7e-23	888 - 947	98	59 / 60	plus	None
JLOC1	JLOC1_20362.1	1114	4e-23	880 - 939	98	59 / 60	plus
Harvest35	U35_36602	303	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (303 bp)

>U35_36602 303 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCAGTCTAAATAGCTGAGAATTCATATAGATGAAATGAGTTC
CAAAACAGCCTGCAAGTTAACTTGAGCGACAACAACGACGACATACANACAATAGTTTGA
AATACTGAGCCTGGAGCATACAACAAACTGGATATGCAGTTTCCCATAGAACGACGAGGA
CACAACCACAACAACAAACAAACACTGACTAGGAGCAAATACAAACAACAAATAAGACTC
CAAATAAACTGATCGAAATCTCCATGATGCCTCAAACTGAACCTGCTGGGTAGCTCAATT
AAT

Homology of Contig U35_36602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None