- Probe CUST_7988_PI390587928
- Source Contig U35_36605
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7988_PI390587928 | Hv_44K_v2 | TCCATTTTGTGCTTTTCTGACGCATTTTGTTGTTTGTAAGCCTGAAATATCAACGAATCG | 25 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.235 | 1.002 | 1.036 | 0.999 | 0.512 | 0.497 |
| Raw | 2080.330 | 2699.266 | 2386.513 | 3548.497 | 650.367 | 689.158 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_19889.1 | 484 | 2e-24 | 366 - 425 | 100 | 60 / 60 | plus | ABC00014 ABC00041 ABC00075 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC47839 |
| JLOC1 | JLOC1_13788.1 | 463 | 8e-25 | 345 - 404 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36605 | 563 | 3e-25 | 26 - 85 | 100 | 60 / 60 | minus |
Contig Sequence (563 bp)
>U35_36605 563 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAAAAAACGATTCGTTGATATTTCAGGCTTACAAACAACAAA ATGCGTCAGAAAAGCACAAAATGGAGAGAGATCTGATAGCCAACTTCCATTCAGATTGCT GATGACAACAAGATGGTAACATCAAGCACTGCACTAAAACATCACACCGTAGCAAGAGCA AGGGATCTTCCTACCACGACATCAGATCACTCCACCACGCAACACATGCTAATCTTTACA CCTGCAGATGAAACAGAAACTAGGAAGCCTAGGCCCTCTCTCCTCTGATGCGTCTTGCGA GCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAAAGGTTGGTGT CCTCGAAAAGCCCCACCAGGTACGCCTCGGCGGCCTCCTGGAGGGCGGAGACGGCGGAGC TCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGCGCGATCTCCCGCACGAGGCGCTGGAAGG GCAGCTTGCGGATGACCAGCTCGGTGCTCTTCTGGTACTTGCGGATCTCCCGGAGCGCCA CGGTGCCCGGGCGGAAGCGGTGC
Homology of Contig U35_36605 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os11g05730.1 | 137 | 9e-60 | protein|histone H3, putative, expressed |
| Brachypodium v1_2 | Bradi4g07840.1 | 137 | 1e-60 | |
| Arabidopsis v10 | AT5G65360.1 | 136 | 4e-60 | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136 |