- Probe CUST_7986_PI390587928
- Source Contig U35_36607
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_7986_PI390587928 | Hv_44K_v2 | CGGGCGCAGACACGGGCGAGAAGGCGCCCGCCGGCAACAAGCCCAAGGCCGACAAGCGGC | 120 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.058 | 2.063 | 1.144 | 0.979 | 0.786 | 0.682 |
Raw | 261.642 | 372.255 | 198.455 | 251.713 | 74.202 | 71.584 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC31732 | 180 | 3e-25 | 121 - 180 | 100 | 60 / 60 | plus | |
Harvest35 | U35_36607 | 180 | 3e-25 | 121 - 180 | 100 | 60 / 60 | plus |
Contig Sequence (180 bp)
>U35_36607 180 Hv_44K_v2 GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTCTCTGTATACCTCTACCTCT ACCCCATGGCGCCCAAGGCCGAGAAGAACCCGGAGGCGACCAAGCCCGAGGAAGAGGAGC CGGGCGCAGACACGGGCGAGAAGGCGCCCGCCGGCAACAAGCCCAAGGCCGACAAGCGGC
Homology of Contig U35_36607 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |