barSeed - Barley Seed Development Database

Probe CUST_7982_PI390587928

Source Contig U35_12651

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7982_PI390587928	Hv_44K_v2	TGCCCAGATGTTCATGTTAGTGAAGAGTTGAAACGAGTTCCATGAGCAAGGTCATACATG	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374020	930	2e-24	749 - 808	100	60 / 60	plus	None
MLOC	MLOC_5336.2	1887	2e-24	437 - 496	100	60 / 60	plus	ABC10709
MLOC	MLOC_5336.1	3636	2e-24	1879 - 1938	100	60 / 60	plus	ABC10709
MLOC	MLOC_5335.1	3537	2e-24	571 - 630	100	60 / 60	plus	ABC10709
JLOC1	JLOC1_3425.1	2256	8e-25	1754 - 1813	100	60 / 60	minus
JLOC1	JLOC1_3424.3	1891	8e-25	569 - 628	100	60 / 60	plus
JLOC1	JLOC1_3424.2	1836	8e-25	514 - 573	100	60 / 60	plus
JLOC1	JLOC1_3424.1	1883	8e-25	561 - 620	100	60 / 60	plus
Harvest21	ABC24092	641	3e-25	582 - 641	100	60 / 60	plus
Harvest35	U35_12651	641	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_12651 641 Hv_44K_v2
GGGGGAACTGGAGGGGGGGTCGATGGGGGCTGGAGGGGACGAGGGAGACGGAGCCTGTCG
TAGATCCCTGCAGCGTCGACGCGCGTGACGCGGAGCGCTGGGAGGCGCCGGCGACGACCG
TGCACTCTGGCAATGGTGAAGATGTTGCTGCGGATGATGACTCCTGGTGTGATGCCTCAG
ATTCTCCAGGATGTGATTCCAGCTTGCACAGAGAATGGACCCACAGACAGGACCACTTTC
ATAAGATGGGCTATAGGGATGGTGTAACAGAAGGGCAGAAGGATGTTGCCCAAGGGGGGT
TCAACCTTGGGCATAGGCAATCTGCGCATGTTGGATACAAGTGGGGTCTCGTTCGGGGGA
TTACTAGTGCATTAGCTAGTCTTTCCGACAGTCTAAAAGAAAAGTTGCTGCTCGACCCCC
AGCGTAGAGGAAAACTTGAAGATTTGCACAACTCCGTGAAAGAAATTTCAGCACTGGGTG
CGCTGCAGCTGTTTCATGAGAGTACTCTTCAGGATAATCGTCGACCAGAGGAAAGCGAGC
TCCAAACAATTACGAAGGACCTTCTACTGTTGNTGCACGAATGCCCAGATGTTCATGTTA
GTGAAGAGTTGAAACGAGTTCCATGAGCAAGGTCATACATG

Homology of Contig U35_12651 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g72200.1	211	9e-51	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None