- Probe CUST_7967_PI390587928
- Source Contig U35_24636
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7967_PI390587928 | Hv_44K_v2 | CAATCAAGCATGGAATGAGCAGCAACTCATCAACACAATAAGACAGTTCCTCAAGCATAA | 263 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.227 | 1.174 | 1.133 | 0.880 | 0.441 | 0.473 |
| Raw | 22.694 | 32.008 | 29.177 | 33.737 | 5.180 | 6.724 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_1443.7 | 5119 | 2e-24 | 2797 - 2856 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.8 | 2550 | 2e-24 | 2280 - 2339 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.4 | 5430 | 2e-24 | 2999 - 3058 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.2 | 4755 | 2e-24 | 2334 - 2393 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.5 | 1894 | 2e-24 | 1515 - 1574 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.3 | 3731 | 2e-24 | 1432 - 1491 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.9 | 4327 | 2e-24 | 2279 - 2338 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.10 | 3355 | 2e-24 | 2982 - 3041 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| MLOC | MLOC_1443.6 | 2414 | 2e-24 | 2143 - 2202 | 100 | 60 / 60 | plus | ABC14794 ABC18983 |
| JLOC1 | JLOC1_890.14 | 1765 | 8e-25 | 1364 - 1423 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.13 | 3817 | 8e-25 | 1364 - 1423 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.12 | 3534 | 8e-25 | 1458 - 1517 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.11 | 1868 | 8e-25 | 1467 - 1526 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.10 | 4303 | 8e-25 | 2220 - 2279 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.9 | 1749 | 8e-25 | 1348 - 1407 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.8 | 5428 | 8e-25 | 2975 - 3034 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.7 | 2673 | 8e-25 | 2272 - 2331 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.6 | 4355 | 8e-25 | 2272 - 2331 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.5 | 3376 | 8e-25 | 2975 - 3034 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.4 | 4350 | 8e-25 | 2274 - 2333 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.3 | 3894 | 8e-25 | 1441 - 1500 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.2 | 4633 | 8e-25 | 2278 - 2337 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_890.1 | 4959 | 8e-25 | 2981 - 3040 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18983 | 657 | 3e-25 | 337 - 396 | 100 | 60 / 60 | minus | ABC18983 |
| Harvest35 | U35_24636 | 659 | 3e-25 | 264 - 323 | 100 | 60 / 60 | plus |
Contig Sequence (659 bp)
>U35_24636 659 Hv_44K_v2 TGCGAGGTACAAGGTTGATGATGTTATCTCCAGGCCGGGCAGGACAAGCATAGATCTTCG TTTACCAGCATTTTTCACGGAGACGACGAGGCTCATTGGCATCAATGGCCCAAGGGATAA ACTCATCAAGTTGCTAATCAAGTGTACCAGAAGCTCGAAGGGCAATTTGAATATCAAGCT TTTGTGTCGGTGTCCCAAAAACCTGACCTAAAGAAGATTTTGAGAAATATACTTTCTCAG ATCTGCTGGCAAGAGTGCACCAGCAATCAAGCATGGAATGAGCAGCAACTCATCAACACA ATAAGACAGTTCCTCAAGCATAAAAGGGTTCATGAAGGGCATTCATTCTGAGACGCTGAA ACTCGCTGCGCCGTTGCCATGATTTCCATGGGAATGCTCGAAGACCCCATCTGGAACACT GGAAGTTGCTCCTACATCTGCGGGAAAATGGACCGATTGATGCGAAACGTAAATGGCCTG TAATTCCAGTTCTGTTCTTTTGGTTGGGATGGGTTGGCGGAAACCCTTGTCGACTTCCAG TTCCATCTCATAACATTAACTCATGCTAGAGTTTGAACATGATAACATTAGTTTTGTAAC AGCCTTGTTATTTCCGAGACTTTAATGACTACGAACAATTTTATACTTAAAAAAAAAAA
Homology of Contig U35_24636 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |