barSeed - Barley Seed Development Database

Probe CUST_7964_PI390587928

Source Contig U35_24638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7964_PI390587928	Hv_44K_v2	TCTTGTCATACGAATTGGCTGGCTTTGCTGTGCACTAATCACATCATGCCACTTAAAAAA	928	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.940	1.486	1.125	0.773	0.374	0.489
Raw	848.492	992.620	673.041	735.997	122.581	175.186

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14483.1	1432	9e-22	24 - 78	100	55 / 55	minus	ABC25201
MLOC	MLOC_14483.2	1559	9e-22	24 - 78	100	55 / 55	minus	ABC25201
JLOC1	JLOC1_9900.4	1546	5e-22	1459 - 1513	100	55 / 55	plus
JLOC1	JLOC1_9900.3	1417	5e-22	1330 - 1384	100	55 / 55	plus
JLOC1	JLOC1_9900.2	1474	5e-22	1387 - 1441	100	55 / 55	plus
JLOC1	JLOC1_9900.1	1601	5e-22	1514 - 1568	100	55 / 55	plus
Harvest21	ABC25201	999	3e-25	929 - 988	100	60 / 60	plus	ABC25201
Harvest35	U35_24638	1000	3e-25	929 - 988	100	60 / 60	plus

Contig Sequence (1000 bp)

>U35_24638 1000 Hv_44K_v2
GAGGGGAAAGTTTGATATGCCAAGGAAATGGCACATTCACATCTGGGGATGGTTACAGAT
GGACGATTTATATATGTAGTAACTGGACAATACGGCCCTCAGTGTAGGGGACCTACAGCT
CGAAATTTTGTGTTGGACACAGAGAGAAAAGAATGGCATGATTTGCCTCCACTCCCAGTT
CCTAGGTATGCTCCAGCCCACAACTTTGGAGGGGGAGGCTTCATGTAATGGGTGGCAGTA
AGGAGGACAGACATGAACCTGGACTTGAACATTGGAGCCTTGCAGTGAAGGATGGGAAAG
CATTGGAGCAAGAGTGGAGGAGCGAGATACCAATCCCGCGTGGTGGTCCTCATAGGGCCT
GTGTTGTTGCTAATGATAAGCTCCTTGTTATTGGTGGTCAAGAAGGAGATTTTATGGCCA
AACCTGGATCACCTATATTTAAATGTGTTAGAAGAAGTGAGATAGTGTACAGCGATGTAT
ACATGCTTGATGATGAAATGAAGTGGAAGGAACTTCCACCCATGCCGAAGCCAGATTCAC
ATATAGAGTTTGCCTGGACGAATGTCAACAATTCTCTAATTATTGCAGGGGGGACCACAG
AAAAGCACCCAATTAATAAAAAGATGACCTTGGTTGGTGAAGTATTTCGGTTCAATTTGG
AGACACTGGAATGGAGTGTGATCGGGCGGTTACCTTTCCGGATCAAGACCACTTTGGTAG
GATACTGGGATGGATGGCTGTATTTCACTTCCGGGCAACGAGACAAGGGCCCAAGCAACC
CATCTCCTAAAAAGGTTGTCGGGTGCATGTGGAGAACTAAGTTGCACCTGTGATTTTTCT
GTAGGTAAAACTGAATTGAGTAGAGCATTCTTTCAGTATTCTTTTTGACACATAACTGTT
TGATCCCTCCCTTGGTGGGCGAGTTGTTTCTTGTCATACGAATTGGCTGGCTTTGCTGTG
CACTAATCACATCATGCCACTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_24638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g41020.1	421	2e-151	protein\|kelch repeat protein, putative, expressed
Brachypodium v1_2	Bradi5g13947.1	417	7e-155
Arabidopsis v10	AT1G51540.1	415	8e-126	Galactose oxidase/kelch repeat superfamily protein \| chr1:19115702-19117381 FORWARD LENGTH=415