- Probe CUST_7963_PI390587928
- Source Contig U35_24639
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7963_PI390587928 | Hv_44K_v2 | ACAGCTTGTGGAAGGAAGCAACAAGGACTTTGTGCTTGAACTGGACTTTGAGCCATTCAA | 465 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.974 | 0.813 | 0.720 | 0.601 | 1.345 | 1.198 |
| Raw | 2.766 | 2.732 | 2.670 | 4.077 | 3.122 | 3.602 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_50162.7 | 3126 | 2e-24 | 2399 - 2458 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.5 | 3109 | 2e-24 | 2396 - 2455 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.6 | 3105 | 2e-24 | 2396 - 2455 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.10 | 3815 | 2e-24 | 3002 - 3061 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.11 | 3262 | 2e-24 | 2358 - 2417 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.9 | 3028 | 2e-24 | 2274 - 2333 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.8 | 3041 | 2e-24 | 2473 - 2532 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.3 | 3220 | 2e-24 | 2423 - 2482 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| MLOC | MLOC_50162.12 | 2689 | 2e-24 | 2010 - 2069 | 100 | 60 / 60 | minus | ABC00602 ABC23306 |
| MLOC | MLOC_50162.4 | 3396 | 2e-24 | 2936 - 2995 | 100 | 60 / 60 | minus | ABC00481 ABC00602 ABC00823 ABC23306 |
| JLOC1 | JLOC1_32035.2 | 3314 | 8e-25 | 737 - 796 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_32035.1 | 3290 | 8e-25 | 713 - 772 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC23306 | 869 | 3e-25 | 352 - 411 | 100 | 60 / 60 | minus | ABC23306 |
| Harvest35 | U35_24639 | 876 | 3e-25 | 466 - 525 | 100 | 60 / 60 | plus |
Contig Sequence (876 bp)
>U35_24639 876 Hv_44K_v2 CGTCGTCCCTATCTGCAGCATACCTTTCACCCAACCGGTTTCCCGGGGTTCGTTCTCCTT GCGGAGAAGCAGAGCAAGGATAGCTTGAGCGATGGGGGAAGCCGCCGGCGACCGCGTCCT CAGCCGCCTCCACAGCGTTAGGGAGCGCATCGGCGACTCCCTCTCCGCGCACCCCAACGA GCTCGTCGCCGTCTTCACCAGGTTGGTCAACCTTGGAAATGGAATGCTGCAGTCCCACCA GATCATCGCTGAGTACAACGCGGCCATCCCCGAGGCAGAGCGCGAGAAGCTCAAGGATGG CGCCTTTGAGGATGTGCTCAGGGCAGCGCAGGAGGCGATCGTCATCTCGCCATGGGTCGC GCTTGCCATCCGTCCAAGGCCTGGTGTCTGGGAGTATGTGAGGGTCAACGTGAGCGAGCT CGCCGTCGAGGAGTTGACTGTCCCTGAGTACCTGCAGTTCAAGGAACAGCTTGTGGAAGG AAGCAACAAGGACTTTGTGCTTGAACTGGACTTTGAGCCATTCAACGCCTCCTTCCCTCG CCCTTCCCTGTCCAAGTCCATCGGCAACGGCGTGCAGTTCCTCAACAGGCACCTGTCGTC GAAGCTCTTCCATGACAAGGAAAGCATGAACCCCCTGCTCAACTTCCTCCGCGCGCACAA TTACAAGGGCATGACAATGATGCTGAATGACAGGATCCGCAGCCTCAGTGCTCTCCAGGG AGCTCTGAGGAAGGCCGAGGAGCATCTGTCTGGGCTCCCGGCAGACACCCCATACTCGGA CTTCCACCACAGGTTCCAAGAACTTGGTCTGGAGAAGGGTTGGGGTGACTGCGCCAAGCG TGCGCAGGAGACCCTTCACCTTCTCCTCGACCTCTC
Homology of Contig U35_24639 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g28330.5 | 568 | 6e-169 | protein|sucrose synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g60320.2 | 816 | 1e-172 | |
| Arabidopsis v10 | AT3G43190.1 | 808 | 1e-100 | | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808 |