barSeed - Barley Seed Development Database

Probe CUST_7961_PI390587928

Source Contig U35_50902

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7961_PI390587928	Hv_44K_v2	GGTGTGAGATATATGATCATGTTGATCTCCATGAAAACTGTTACTCCCTTACACTTTTTT	-1	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.377	2.830	1.601	0.555	0.162	0.196
Raw	151.956	283.662	139.406	80.682	7.284	10.346

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC50081	700	8e-21	94 - 148	98	54 / 55	minus
Harvest35	U35_50902	384	5e-23	99 - 154	100	56 / 56	minus
Harvest35	U35_48371	700	8e-21	94 - 148	98	54 / 55	minus

Contig Sequence (384 bp)

>U35_50902 384 Hv_44K_v2
TTTTTTTTTTTTTGTGCTTAAAATACTTCTCCCTTCAAATTTAAAGAGCAATTGTNGNAA
AAAAGGAAAAAAAANATCCCTTTAAATGCCAAAAANANAAGTGTAAGGGAGTAACAGTTT
TCATGGAGATCAACATGATCATATATCTCACACCCTGGACACCAAAAACACGTAATGCAT
GCACAAATACGCAAACTGGTCTTCACTCCGGCACATTTGCCGCAACCTTGGTATAGTAAC
AGCCTAACTAGTCCACCAATCGGACCTGAATGGATTGGTACACCGATGATGTGGCAGCAG
CACAAGGCTGATTCAGATCCGAGTCGGCGACGACCAAGACGGAGTCCCCAGGTTTCACTG
AACCCTTGGACTTGAGCCTCGTGC

Homology of Contig U35_50902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None