- Probe CUST_7957_PI390587928
- Source Contig U35_36612
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7957_PI390587928 | Hv_44K_v2 | GTTACAGTTAACTGCAAGGTTCCGTTTGAGTCTCCCAAACTTGTACAAGGTTTGAAGCGT | 480 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.533 | 1.128 | 1.164 | 0.780 | 0.432 | 0.397 |
| Raw | 24.448 | 25.024 | 25.516 | 28.222 | 3.616 | 3.916 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56627.2 | 2864 | 7e-23 | 1624 - 1683 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_56627.1 | 3255 | 7e-23 | 1600 - 1659 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_56627.6 | 3334 | 7e-23 | 1617 - 1676 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_56627.5 | 2785 | 7e-23 | 1593 - 1652 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_56627.3 | 3340 | 7e-23 | 1623 - 1682 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_56627.4 | 3303 | 7e-23 | 1623 - 1682 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_36650.3 | 3234 | 4e-23 | 1709 - 1768 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36650.2 | 3535 | 4e-23 | 1733 - 1792 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_36650.1 | 3498 | 4e-23 | 1733 - 1792 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC31738 | 562 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36612 | 562 | 3e-25 | 481 - 540 | 100 | 60 / 60 | plus |
Contig Sequence (562 bp)
>U35_36612 562 Hv_44K_v2 GCTCTGCTTGAGATGATGATCTGCCACCTCCCCTCTCCGTTAGAAGCACAGGAATATCGT GTGGAGAACCTGTATGAGGGCCCCCTTGATGATAAGTACGCAGAAGCTATTAAACAATGT GATCCTGAAGGTCCTCTTATGCTGTACATTTCCAAGATGGTTCCAGCATCTGATGTGGGC AGATTTTTCGCGTTTGGTCGTGTCTTTTCTGGAAGGATTGCAGCTGGCATGAAGGTCCGG GTCATGGGGCCTTCCTATGTCCCCAGCATGGAAACTGATTTGTTCGTGGAGTCTGTCCAG CGTACCATTATATGGATGGGAAAGAATCAATGTGACGTTCCGGATGTTCCTTGTGGTAAC ACAGTTGGACTGATTGGTCTGGATGCATCTATAACAAAGAGTGCTACCCTGACAAGTGAG AAGGAGGTTGATGCACACCCAATCAGAGCAATGAAGCTCCCTGTATGCCCTCTGATGTTT GTTACAGTTAACTGCAAGGTTCCGTTTGAGTCTCCCAAACTTGTACAAGGTTTGAAGCGT CTGGCGATGTCTGATCCCGTAG
Homology of Contig U35_36612 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g02820.3 | 652 | 3e-91 | protein|elongation factor, putative, expressed |
| Brachypodium v1_2 | Bradi3g44160.1 | 844 | 1e-89 | |
| Arabidopsis v10 | AT3G12915.1 | 820 | 1e-89 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr3:4112999-4115708 FORWARD LENGTH=820 |