barSeed - Barley Seed Development Database

Probe CUST_7950_PI390587928

Source Contig U35_36618

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7950_PI390587928	Hv_44K_v2	GTAGCACCATGCCACTGCCATTGAGATGTATAAGAAAGAAACTTATGTTCTTTTGTGAGT	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65527.2	5575	2e-24	1167 - 1226	100	60 / 60	plus	ABC14915
MLOC	MLOC_65527.1	5990	2e-24	1575 - 1634	100	60 / 60	plus	ABC14915
Harvest21	ABC31743	430	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_36618	430	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (430 bp)

>U35_36618 430 Hv_44K_v2
GTGATAAATCTGAGGTTGTTGGAGATAGACTGAAGGAAGCACTGTACATAAACAAGTCAC
TTTCAGCACTCGGAGATGTGATCGCATCCCTTGCCCAGAAAAACTCGCATGTCCCTTACC
GCAACAGCAAGCTTACCCAGCTTTTGCAAGATTCTCTAGGAGGACAAGCAAAAACACTGA
TGTTTGTGCACATAAGCCCTGAACCAGATGCTGTTAATGAGACAATAAGCACCTTGAAGT
TTGCTGAACGAGTTGCCTCTGTTGAGCTGGGCGCAGCAAAAGCGAATAAAGAAGGTGGTG
AGGTTAGGGAGCTCAAAGAACAGGTACTACTTATTCTTGATTTTTTGTTTCTGTGAATTA
GCTATAGGTAGCACCATGCCACTGCCATTGAGATGTATAAGAAAGAAACTTATGTTCTTT
TGTGAGTTTT

Homology of Contig U35_36618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36100.1	955	5e-58	protein\|kinesin-4, putative, expressed
Brachypodium v1_2	Bradi4g05370.1	905	9e-60
Arabidopsis v10	AT5G27000.1	987	4e-52	\| Symbols: ATK4, KATD \| kinesin 4 \| chr5:9498099-9502951 FORWARD LENGTH=987