- Probe CUST_7948_PI390587928
- Source Contig U35_36619
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7948_PI390587928 | Hv_44K_v2 | TGTACATTTTGCTGTCCCAACTCCGATCCATAATTTATATTCATCTCAAAAGATGTTCCA | 20 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.983 | 2.166 | 1.330 | 0.730 | 0.365 | 0.321 |
| Raw | 351.661 | 623.730 | 319.206 | 280.802 | 49.289 | 47.257 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_31941.5 | 2668 | 7e-23 | 1420 - 1479 | 98 | 59 / 60 | plus | ABC31744 ABC46474 |
| JLOC1 | JLOC1_20915.3 | 2286 | 4e-23 | 1423 - 1482 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_20915.1 | 1247 | 4e-23 | 384 - 443 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC31744 | 574 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus | ABC31744 |
| Harvest35 | U35_36619 | 574 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus |
Contig Sequence (574 bp)
>U35_36619 574 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAATGGAACATCTTTTGAGATGAATATAAATTATGGATCGGAG TTGGGACAGCAAAATGTACAGTACATGGCTACTAAAAACAGAGCACATAGCTGACGCCGC AAGAAACTGATGGTTCATTACAAGATAACTCATTCATCCGCTTACACATTGCTACTCACG GGGAAATTATAAGCTTAGTGGCCAAAGCCAACAACAGTATGAAAAACAAGCACCGGTGCA CAAAACCAAGTACTAAATAGCGATTACCCCTCTAGCCTCGAATTTCTTCTTGATGAAAGT GGCCTCCTACCCCAAGCATACTCAACCATACATTGTCAGTGCGCCACATCACCAGTGATC ACTTTTTCTTGTGGATTGTAGAAACTCATGTACGGAATCAAAACATAAAGCTTTTCTCTC TTCTGTATTGCCTTCCACCGTAATGTCTTGAGATTAAGCTCGTAGTTGTCAAGGCCCGTG TTCACGAAAATGGTATCACCGCCCTCCAGAGATCCAATCAGTCTAAGTCTTTTATTGGGA ATTTGAAGGGGGGGATGGTTATTAAGATGGATGA
Homology of Contig U35_36619 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |