barSeed - Barley Seed Development Database

Probe CUST_7944_PI390587928

Source Contig U35_12666

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7944_PI390587928	Hv_44K_v2	TTTTAGAATGGAACTAGCAGGTTCTGCTGCAGATGCTTTGCTTCCTTTGCTTTTCTGGGA	533	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.012	1.528	2.080	1.818	0.768	0.658
Raw	77.149	182.546	216.477	307.845	43.346	41.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11126.1	2755	7e-23	324 - 380	100	57 / 57	plus	ABC08375
MLOC	MLOC_11126.2	1236	7e-23	309 - 365	100	57 / 57	plus	None
JLOC1	JLOC1_7332.1	1380	4e-23	352 - 408	100	57 / 57	plus
Harvest21	ABC24653	601	3e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_12666	601	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_12666 601 Hv_44K_v2
GCTCGCTTTCTTAACTCTGCGAAGTGAATACAATCCGAAAAGTACAAGGATCTGCGTGCT
TTGCTTCGGCTTTTAACAAATATATGCTCAAAGGATTTGGTGGGTTTCTTATCTGATAGC
AACATTGAAGGCTCCCCAGATATTGCAGAGGTCATTTATGTTGGTCTTGATATTGTGACT
CCCTTGATATCTTTGGATCTTCTCAAGTACCCTAAACTCAGTCGTGATTATTTTGTACTT
ATGTCGCACTTGTTGGAAGTGTACCCTGAGAAGGTTGCTCACTTAAACAGGGATGCTTTT
GGAAGAATTACTGGTAGTCTTGAATTTGGTCTGCGTAATCAGGATGGCGATGTTGTTGAG
AGGTGTCTCGCAGCAGTAAATGCCCTTGCCTCGTACCATTTCAAAGAAAGACTTGGAGGC
AGAGGAGGACTTGGCTCGCAGGTTATGGAATCTGAAGGATCGAATGGCAAACTTCAGGAA
AGCATAACAAGTCACTTCTTGAGGCTTCTCCTGCAACTACTTCTGTTTGAAGATTTTAGA
ATGGAACTAGCAGGTTCTGCTGCAGATGCTTTGCTTCCTTTGCTTTTCTGGGAACAGGAG
T

Homology of Contig U35_12666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33710.1	1167	1e-97	protein\|expressed protein
Brachypodium v1_2	Bradi3g28760.1	1161	8e-107
Arabidopsis v10	AT3G04490.1	1118	6e-58	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). \| chr3:1200816-1209713 FORWARD LENGTH=1118