barSeed - Barley Seed Development Database

Probe CUST_7932_PI390587928

Source Contig U35_24649

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7932_PI390587928	Hv_44K_v2	GGATGTGCTACGCTAGTGTAGAAACGACGGATGCACCCGGTCTGTATCATCATTAAAAAA	940	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.039	0.630	0.806	1.614	0.984	1.440
Raw	4.246	136.903	148.887	463.801	95.489	154.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51101.1	3198	2e-24	2059 - 2118	100	60 / 60	plus	ABC20130
Harvest21	ABC20130	1036	3e-25	941 - 1000	100	60 / 60	plus	ABC20130
Harvest35	U35_24649	1036	3e-25	941 - 1000	100	60 / 60	plus

Contig Sequence (1036 bp)

>U35_24649 1036 Hv_44K_v2
CGAGCAAGGTAGCTCAACGTCGACGGGTCGGCATGTGACCCGTGGCGGCTGTGCACGGTG
CAGCAGGTGGAGGACGCCAAGGCCGTCATCCGCGTGCTGCCGATATGGTCCACGGGGATC
ATACCCGGCGTGATCGTCGCCCAGGTGATGTTCCCCGTGCTGCAGGCAGACTCGATGGAG
CGCCGCATGGGAGCGATGATTATCCCGGCCGCCTCCTTCGGCGTCTTCAGTATCGTCACA
CTCACCGTCTGGGTGGCCTTGTACGACCGCGTGCTCGTGCGGCCCCTCTCGCGGCTCACC
GGCCACGCGCGCGGGCTCAGCCTGCGGCAGCGCATGGGGGCCGGGCTGGCGATCTTCGCC
TTGGCCATGGCCGTGGCCGCGCGAACCGAGGCCCTCCGCCGCGGCGAGGCCATCGCGGAG
GGCTTCCAGAACGACGAGCAGGCGGTGGTGCGCATGTCGGCGATGCGGCTTGTGCCGCAG
CACTGCCTCATTGGGCTCGCCGACGCGTTGAACCTGATAGGGCAGATCGAGTTCTACTAC
TCCGAGTTCCCAAAGACCATGTCCAGCATCGGGGTGTCGCTGCTGGCCCTCGGCTTGGGC
TTCGGCGCCGTGCTGGGGAGCGCCATCGTGGGGATCATGAACAGCACCACCGGGAGGGAC
GGGCGCAACAGCTGGTTGTCGAGCAACCTCAACAGGGGTCGCTACGACTACTACTACCTG
GTTCTCGCGGCGCTGTCCGTGGCCAACTTGGTGTACTTCGTCTGGTGCGGCTGGGCGTAC
GGCGAGGAAGGGCAGAGCAGAGTGATTGCATTGGCGGCTGAGGAGGAGGAGGAGGAGGAA
CAGAAGAAGCAAGAACAACACAAATGATAGGCAAGGCGTTCGCCCGTTTGACCTCGGCGC
GCGCCTTTCTTCTCTCTTGCGAATTGCTGAATTGTGATAGGGATGTGCTACGCTAGTGTA
GAAACGACGGATGCACCCGGTCTGTATCATCATTAAAAAAATGTCACATGTTTTTAGTTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_24649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55610.1	591	3e-102	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi2g50580.1	587	1e-106
Arabidopsis v10	AT1G52190.1	607	3e-58	Major facilitator superfamily protein \| chr1:19434671-19438673 FORWARD LENGTH=607