- Probe CUST_7928_PI390587928
- Source Contig U35_36621
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7928_PI390587928 | Hv_44K_v2 | CTTTGTGTTTTTCATTCTACTCCGAATTGTATTGGGAGACCATATGTAACTTTCGTTGAT | 415 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.432 | 6.245 | 1.794 | 0.256 | 0.029 | 0.034 |
| Raw | 21024.067 | 23661.643 | 5837.750 | 1337.298 | 54.900 | 68.282 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57955.1 | 383 | 2e-24 | 61 - 120 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_76632.1 | 476 | 3e-21 | 29 - 88 | 97 | 58 / 60 | minus | None |
| Harvest21 | ABC31748 | 479 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36621 | 479 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (479 bp)
>U35_36621 479 Hv_44K_v2 GAGAACATTGCCCTGCGTGATGCGCTCCAGAACGCCGTCTGCCCCAGCTGCGGCCCACCC GTCGCCGAGGATTACTACGACGAGCAGCAGCTGCGCGTGGAGAACGCCCGGCTAAAGGAG GAGCTTGCCGGCCTCACCTATAAGCCCCTCGGCCGCCCGTTCACGCAGATGCCGCAGGGC ACGCCGCAGATGTCCATGGCCACCGTACAGATGGGCGGGCACCACCAGCCGTTCGGGCGC GCCGGCCTGTCGCTCGACCTCTACCTCAGCGGGGCCGGCATGTCCGAAGGGTGTGGGCAG GAGGACTCGGGAGCACATTTTAGCACAAACAGACAATAAAATTAGCACCCAACTATCGTC GGCACCGTAATGTTGTAGCTCATCTTTAAAAAAATCGTGTGTAATCTCAGTTAGTCTTTG TGTTTTTCATTCTACTCCGAATTGTATTGGGAGACCATATGTAACTTTCGTTGATTAAT
Homology of Contig U35_36621 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |