- Probe CUST_791_PI390587928
- Source Contig U35_34868
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_791_PI390587928 | Hv_44K_v2 | AATGTACCTAGTTTTCGGCTCTGTTCTGCTCTATCCTGGCCATATGGGGACTCTGAATTT | 348 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.233 | 1.498 | 1.188 | 0.765 | 0.240 | 0.247 |
| Raw | 4675.713 | 8696.773 | 6090.377 | 6245.403 | 680.937 | 757.772 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_17901.1 | 627 | 2e-24 | 516 - 575 | 100 | 60 / 60 | plus | ABC14049 |
| JLOC1 | JLOC1_12369.1 | 843 | 8e-25 | 517 - 576 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34868 | 409 | 3e-25 | 349 - 408 | 100 | 60 / 60 | plus |
Contig Sequence (409 bp)
>U35_34868 409 Hv_44K_v2 GGCGAATTGGGCCCTCTTCATGATGCTCGAGCGGCCGCTATATGGAGCTTGAGTCAGCTG CAGTCCCTTCGTACCTTCAGCCAGATGAGGAAGCTGATCTTAACTTGCCTGCTGCACCGA CTTATCCTGCAGCAGTTCCAGTAAGCAGGCACCAGGAGGACGAGCTTGGACTGCCACCGG TACCTCGAGCATCGCTCCGTAGTTAGAACTTGGAAGTATTTCCCGTCCTTGTTCTCAGTG TTACTGTTACCTCATTGTTATTGATGCGAGAGTAGTCTTTGTGTTTGTACTTCAACAATC CTTGTTAGCCAGTTCTTGATGGTACTGCTTCTTGCGGTTAAGCTGTGGAATGTACCTAGT TTTCGGCTCTGTTCTGCTCTATCCTGGCCATATGGGGACTCTGAATTTG
Homology of Contig U35_34868 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |