barSeed - Barley Seed Development Database

Probe CUST_7917_PI390587928

Source Contig U35_36628

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7917_PI390587928	Hv_44K_v2	TCCGTGGTCAAGTTCTCAACAAATGTATCCGATCTGTCCATTAACATTATGAAAAATTGG	426	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.302	3.065	1.392	0.461	0.051	0.039
Raw	840.569	812.132	299.754	159.251	4.859	2.745

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC31759	524	3e-25	427 - 486	100	60 / 60	plus	ABC31759
Harvest35	U35_36628	524	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (524 bp)

>U35_36628 524 Hv_44K_v2
GATTGCCACATATCGTCCACTCAGCTACTGATCATCCAAGACGAGGAAGAATCTACTACT
AACCACATACAAGATGGGCAAGAAACTGTTGTTCATGGCCATCCTTCTCATCGCTTCCCT
GGAGGCGGCGACGACGGCGGTGCGGGGCGAGCTGGTGTGCGACGTGCTGAGGGCGGAGTG
CATGGTCAAGTGCTGGCAGGGGAGCGGCAAGTGCATGCGTTGTTGCCAGGCCCTCGGCTA
CGTCCATGGCCGGTGCAACCTCGTTCGCGGTGAGGTTTGCTACTGCTGCAACGACGACGG
TGCACCTCCCTCCCCGCCATCACAAGAGCGGCACGGCCGGCTGCCATAGATCCTCCTCCG
CCATCTCATCCTCACTTCCTTTATGTATGATGGATGGAGCGAGCTGACTCGTGGACGTTT
GTCTTGTCCGTGGTCAAGTTCTCAACAAATGTATCCGATCTGTCCATTAACATTATGAAA
AATTGGAAAAANAAAAAAAAAANANNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_36628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None