barSeed - Barley Seed Development Database

Probe CUST_7910_PI390587928

Source Contig U35_12674

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7910_PI390587928	Hv_44K_v2	TTGTTCAACTAGTCAAAGAACGCAGATTTTGTGGGCGTCCCACAGCAGACAACTTGAAGA	536	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55623.1	4481	2e-24	2741 - 2800	100	60 / 60	plus	ABC06680 ABC06681
MLOC	MLOC_55623.2	4645	2e-24	2905 - 2964	100	60 / 60	plus	ABC06680 ABC06681
JLOC1	JLOC1_35907.3	4116	8e-25	2349 - 2408	100	60 / 60	plus
JLOC1	JLOC1_35907.2	4585	8e-25	2818 - 2877	100	60 / 60	plus
JLOC1	JLOC1_35907.1	4339	8e-25	2572 - 2631	100	60 / 60	plus
Harvest21	ABC47414	664	3e-25	537 - 596	100	60 / 60	plus
Harvest21	ABC47993	560	1e-23	498 - 557	98	59 / 60	plus
Harvest35	U35_12674	664	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_12674 664 Hv_44K_v2
AAAGCGTAACGAACTAGGAATACTCAACATGACAAGCTGGCCACGTGTTGTCTTTGATGT
CACTTCACAAGAAACGTCTTTTCATATTCCTTTACACCGTATGCTTTCATTACTATTGCG
TGAAGCAATGAAGAAATGTTTCGGAGAGGATGCCAAAACAGAGGAATGTTCAGTTGTGCA
GTCCAATGAGTTCTTCTCTCAGGTACTTGGAGGTTGTGAGCCTTGTGGGTTTTCTTCAGT
TGTGATGGAGCATCCATTAAGATTGAGAGTATTTTGCGCACAAGTGCGTGCTGGAATGTG
GCGTAAGAACGGAGATGCAGCTGTACTTAGTGCTGAGTGGTACCGCTCTGTGCAATGGCT
TGAACAGGGCTTGGAGTCGGATTTGTTTCTGCTTCAATGCTGTGGTGCATTATCTTCTCC
AGAGTTCTTTGTGAGGACCATTCAAGAAAGATTTGGTTTGTCAGATTATACATCTATGGA
TCTCACGGAACAGAATGAGTATGAATCAGTTCTTATACAAGAAATGCTAACTTTTCTTGT
TCAACTAGTCAAAGAACGCAGATTTTGTGGGCGTCCCACAGCAGACAACTTGAAGAGAGA
ATTGATTTATAAGTTGGCCGTTAGAGATGCCACTCATAGCCAGATTGTGAAGTCCCTTCC
CCGT

Homology of Contig U35_12674 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05500.2	2057	5e-86	protein\|zinc finger protein, putative, expressed
Brachypodium v1_2	Bradi2g03180.1	2081	1e-121
Arabidopsis v10	AT5G02310.1	2006	1e-79	\| Symbols: PRT6 \| proteolysis 6 \| chr5:474279-482552 FORWARD LENGTH=2006