barSeed - Barley Seed Development Database

Probe CUST_7908_PI390587928

Source Contig U35_433

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7908_PI390587928	Hv_44K_v2	CAACTTTTCACTAAAATCGATGTATCTCGACATATTTTTCAATGCAAGATACATCCGTCC	1124	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39030.1	901	2e-23	555 - 612	100	58 / 58	plus	ABC02951
JLOC1	JLOC1_25424.1	896	1e-23	555 - 612	100	58 / 58	plus
Harvest35	U35_433	1201	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1201 bp)

>U35_433 1201 Hv_44K_v2
GCACCACACACACCAACCGCCCTTCACTTTGTAAGCTCATTTCCAAGAAGCAGCTCTAGT
CCAGGGGCAGCCACAATGGCACTGCGTTCTCTGGCCGTGCTCGCGGTCGTCTTGGTGGCG
CTCTCGCAGGCCGCCTCGGTCAAGCCCTGGCTCGATGACAAGTTCAACACGGACGGCAAT
GTCCGGACGGGATACGACGTTTCTGGGCAGCAAGTGGTGACGCTCAGCCTCGACCAGCAC
TCAGGCGCCGGCTTCAACTCCGATGAGCAATACCTCTACGGTGAGTTCAGCATCCAGATG
AAGCTCATCCCGGGAAACTCGGCCGGCACCGTATCCTGCTTCTACCTTTCTTCCGGTGAT
GGAGACGGGCACGACGAGATCGACATGGAGTTCATGGGCAACTCCAGTGGCCCTGGCCAT
CCGGTAGTGCTCAACACCAACGTCTGGGTCAACGGCGATGGCAAGAAGGAGCACCAGTTC
GACCTCTGGTTCGACCCCGCCGCCGACTACCACACCTACACCATCATCTGGAACCCGGAG
AACATCCTCTTCAAGGTGGACAACCTCTTCATCCGGTCCTTCAAGCGCTTCGCCGGCATC
CCCTACGCTGGCTCCAAGCCCATGAGGCTGCACGCCACGCTGTGGGACGGCAGCTACTGG
GCGACCGAGAAGGGCAAGGTCCCCATCGACTGGTCCAACGCACCCTTCAACGTCTTGTAC
AAAAACTACTACGCCAACGCCTGCGCCAGCGGCGGCGCTTGCCATGCCGGCAGCGACGGG
TGGATGAACAGGCAGCTCGACGGCTCCGAGTGGGGCACCGTCAAGTGGGCGGAGCAAAAT
TACATGCGCTACAACTACTGCGCAGATGGCTACAGGTTCCCACAGGGGTTCCCCGCCGAG
TGCAGCCGCTACTGATCCAGACGGCCGGGCATTCACCCATTGATTGATATCCTTTTTTAT
ACAGTACATGATTCTTGTTCTTCTTTGTGAATTTTGTAATTAAAAAGCAGCCCTGAGGCA
GCGTGTGGGCGATTGTTTGTACATTTTTCCTACAGAAAAGAAGCATGTAATTTTTATTGC
GCCTTTAAAAAAAAAAAAAAAACTACCCCCTCCCTCGTTCCATACAACTTTTCACTAAAA
TCGATGTATCTCGACATATTTTTCAATGCAAGATACATCCGTCCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	7e-111	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18590.1	281	2e-108
Arabidopsis v10	AT5G48070.1	282	6e-76	\| Symbols: ATXTH20, XTH20 \| xyloglucan endotransglucosylase/hydrolase 20 \| chr5:19482158-19483231 FORWARD LENGTH=282