barSeed - Barley Seed Development Database

Probe CUST_7907_PI390587928

Source Contig U35_434

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7907_PI390587928	Hv_44K_v2	CATCATGAGTATGTATGTATGTATGTGAGATGGTGAAAGATTGATCTGGACAAGTAGTGC	626	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362139	709	2e-24	628 - 687	100	60 / 60	plus	ABC00169 ABC00620 ABC35589
Harvest21	ABC35589	271	3e-25	142 - 201	100	60 / 60	plus	ABC35589
Harvest21	ABC00620	947	5e-23	855 - 910	100	56 / 56	plus	ABC00620
Harvest35	U35_434	743	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_434 743 Hv_44K_v2
ATCGCCCGCCCTACCGAGATCAAGGACTCGCGGCGCGTTGGTCCCTGAGCACCCACCCAC
CCACACAGCTCCAGCTCCGAAGGAGGAGTGAGGACCATGGCCACCTCCACCGCCGCCGTG
CTGTCCCCGCCCGCCGTGGCCGGGCTCCGCCTAGCGCCGTCCCCGCGCGCGGCGGCCTCG
TTCCGGGGGGTCTCACCGCCGGCGCGGCGGTCCGTGGCGGCGCGGGCCGCGCTGGAGCCG
TCGGTGGTGATCAGCCTCAGCACGGGGCTGTCGCTCGTGATGGGCCGCTTCGTCTTCTTC
AACTTCCAGCGGGAGAACGTGGCGAAGCAGGTCCCCGAGCAGAACGGCAAGACCCACTTC
GAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGGATCCTCAAGTCCAACGACCCCGTC
GGCTTCAACCTCGTCGACGTCCTCGCATGGGGCTCCATCGGCCACATCGTCGCCTACTAC
ATCCTCGCCACCACCAGCAACGGATACGACCCTCCCTTCTTCGGCTGATCCGTCCGTCTC
CCCTGCCTGCCTGCGTGCCGGCCGGAGCGGCTTTGCTGTTGTAATCCGCCGTGTTTTCAT
TAGTTCTGTATACGCTGATGATGTACCATCATGAGTATGTATGTATGTATGTGAGATGGT
GAAAGATTGATCTGGACAAGTAGTGCAAAAAAAAAAAAAAAAAAATTTTATCTCTCTCTT
AAAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g30340.1	142	1e-63	protein\|photosystem I reaction center subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g33320.1	157	5e-51
Arabidopsis v10	AT1G55670.1	160	6e-55	\| Symbols: PSAG \| photosystem I subunit G \| chr1:20802874-20803356 REVERSE LENGTH=160