barSeed - Barley Seed Development Database

Probe CUST_7902_PI390587928

Source Contig U35_439

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7902_PI390587928	Hv_44K_v2	CTGTCAAACCTCAATTATGTAGCCCAAATGTTCTTATCCGAAGGATGTATTTTCTTATCC	1266	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361630	1136	2e-24	601 - 660	100	60 / 60	plus	ABC04618
MLOC	MLOC_59964.3	1258	2e-24	1167 - 1226	100	60 / 60	plus	ABC04618 ABC04620
MLOC	MLOC_59964.2	4159	2e-24	3412 - 3471	100	60 / 60	plus	ABC04618 ABC04620
JLOC1	JLOC1_39063.1	1975	8e-25	1333 - 1392	100	60 / 60	plus
Harvest21	ABC04618	1377	3e-25	1152 - 1211	100	60 / 60	plus	ABC04618
Harvest35	U35_439	1492	3e-25	1267 - 1326	100	60 / 60	plus

Contig Sequence (1492 bp)

>U35_439 1492 Hv_44K_v2
CAAAAGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCA
AGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCACCCCTCCCCTCCTCTCCT
CTTCTCCACCCCCGCCATAGGTTCCAGGGGACCTCGCCTCGCCTCGCTGCCTCAAGCCAC
CAGCGGCGGGACGCCGGAGGAGGGGAGCATGAAGGTCTCCGTCGTGTCCCGGAGCGGCCG
CGAGGTCGTCAAGGGCGGCGTCGAGCTCAAGGACTCGGCCAAGGTCGCGGATCTGCAGGA
GGCCATCCACGCCAAGACTAAGAAGTATTATCCTGCTAGGCAACGGCTCACCCTCCCTGC
ACAACCTGGAAAATCTGGAAAGCCAGTTGTCCTCAATCAAAAGGCCAGCCTATCAGAATA
CTGTGAGAAGGGTTCCGGGTCCCTGACAGTAGTCTTCAAAGATTTAGGCCCGCAGGTCTA
CTACAGCACGCTCTTCTTCTGGGAATACGTCGGCCCTCTTATCATCTACCCCATCTTCTA
TTACCTGCCCGTCTACAAATACTTTGGGTATGAGGGAGAGCGGGTCATCCACCCCGTCCA
GACCTACGCCATGTACTACTTCTGTTTCCACTACTTCAAGAGGATCATGGAGACCTTCTT
CGTCCACCGCTTCAGCCACGCGACTTCCCCCGTGTCAAACGTCTTCAGAAACTGTGCCTA
CTACTGGACCTTTGGAGCCTACATTGCCTACTACTGCAACCACCCTCTGTACACCCCCGT
GAGTGACCTGCAGATGAAGATTGGGTTCGGCATCGGGGTCGTGTGCCAGATCGCAAACTT
CTACTGCCACATCCTGCTGAGGAACCTCAGGAGCCCGACCGGCAGCGGCGGCTACCAGAT
CCCACGGGGCTTCCTGTTCAACATCGTGACATGCGCAAACTACACCACCGAGATCTACCA
ATGGCTCGGGTTCAACATCGCCACCCAGACCGTGGCGGGTTACGTCTTCCTTGCCGTGGC
GGCGGCCATCATGACCAACTGGGCGCTTGGAAAGCACAGCCGCCTGAGGAAGCTGTTCGA
CGGGAAGGATGGGCGGCCCAAGTACCCTCGCCGATGGGTGATCCTTCCTCCATTCCTGTG
AAGAAGACACTGTGCTTGCAAGGCTGGTATCTAGAGATTCAACATTTATTCTGTTCCAGT
GTTCAAAAGTTGAAAGCCATCATTCGATTTCACGCAAACATTCCTACTAATCGTGCCCTG
TACCAGCTGTCAAACCTCAATTATGTAGCCCAAATGTTCTTATCCGAAGGATGTATTTTC
TTATCCTATTGTTGAAAAAAATTCTCTGGGGTTTGTCGAAAAAAAAAAAAAAAATCAAGT
CCAACCTCAAGATGGTTCATCTGATATGTGTCGGCCNCGTGTTCCGTGCTTCTGNNAACC
GTAGGANNGANTGCAAGCATATTGCCCATTCCGATGCTTTACCATCATTCCT

Homology of Contig U35_439 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g05670.1	311	protein\|3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi2g03297.1	311
Arabidopsis v10	AT3G55360.1	310	\| Symbols: CER10, ECR, ATTSC13, TSC13 \| 3-oxo-5-alpha-steroid 4-dehydrogenase family protein \| chr3:20521186-20522856 REVERSE LENGTH=310