barSeed - Barley Seed Development Database

Probe CUST_7901_PI390587928

Source Contig U35_440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7901_PI390587928	Hv_44K_v2	TAAGATCGATGAGGCTCTTCGTGATAAGTACGTACGTACTAGTCCTTCTTCTTAATCAAT	672	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.818	5.162	1.516	0.672	0.136	0.244
Raw	1129.704	1427.746	341.212	259.954	16.666	32.911

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK253042.1	810	2e-24	671 - 730	100	60 / 60	plus	ABC02141 ABC02142 ABC26778
MLOC	MLOC_75066.1	1503	2e-24	177 - 236	100	60 / 60	minus	ABC02141 ABC02142 ABC26778
JLOC1	JLOC1_50060.1	1204	8e-25	343 - 402	100	60 / 60	minus
Harvest21	ABC02141	248	3e-25	160 - 219	100	60 / 60	plus	ABC02141
Harvest21	ABC02140	477	3e-25	314 - 373	100	60 / 60	plus
Harvest21	ABC02137	875	8e-21	657 - 719	95	60 / 63	plus
Harvest35	U35_440	843	3e-25	673 - 732	100	60 / 60	plus

Contig Sequence (843 bp)

>U35_440 843 Hv_44K_v2
ACTAGCTTTATCTATCCTTACTCTTTTCCAGCCACTTAACACTTGGCTAGGCTAGCTCTC
CTCCTCTGCAGTACGTAGCAAGCAGCCATGGCCGCCCTCTCCTCTGCAGCCGTGTCCGTC
CCTTCCTTCGCCGCCGCCACCCCCATGCGCAGCAGCAGAAGCAGCAGGATGGTTGTGCGC
GCTTCCCTGGGCAAGAAGGCCGCCAGCGCGGCCGTGGCCATGGCCGCCGGCGCCATGCTG
CTGGGCGGGTCCGCGATGGCACAGGACGTGCTCCTGGGTGCCAACGGCGGCGTGCTGGTG
TTCGAGCCCAACGACTTCAGCGTCAAGGCCGGCGAGACCATCACCTTCAAGAACAACGCC
GGGTACCCGCACAACGTGGTGTTCGACGAGGACGCCGTGCCCTCCGGCGTCGACGTCTCC
AAGATCTCCCAGGAGGAGTACCTCAACGCCCCCGGCGAGACCTTCTCCGTCACCCTCACC
GTCCCCGGCACCTACGGCTTCTACTGCGAGCCCCACGCTGGGGCCGGCATGGTCGGAAAG
GTCACCGTCAACTAATGAAGCTACCAATTTGGGTCGATTGATCGCTCAAATTGGACGTGT
CGTCATGCATGCATCATATTGATTAATTGTACGCTATATGTATGTATATGTTTTCTACTC
TACTCTACTCTATAAGATCGATGAGGCTCTTCGTGATAAGTACGTACGTACTAGTCCTTC
TTCTTAATCAATTAGCTTTGCTCTGATGATGATCTAATCTAAGCCTGCGGAACGCGCGTG
TATATATATATGCTTAATTATTTTTCATTTCCAAAAAAAAAAAAAAAAATTAACCACACC
GGC

Homology of Contig U35_440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01210.1	155	9e-62	protein\|plastocyanin, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g52460.1	157	7e-63
Arabidopsis v10	None