barSeed - Barley Seed Development Database

Probe CUST_7900_PI390587928

Source Contig U35_441

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7900_PI390587928	Hv_44K_v2	CTTTGCTTGCATGATTTGCAACATTTGAAGGAAGCACGGAAACTATCAAATTCTGAAAAA	1157	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11961.2	1664	7e-23	1486 - 1542	100	57 / 57	plus	ABC01523
JLOC1	JLOC1_7982.1	1638	4e-23	1362 - 1418	100	57 / 57	plus
Harvest21	ABC01523	1212	3e-25	1132 - 1191	100	60 / 60	plus	ABC01523
Harvest35	U35_441	1228	3e-25	1158 - 1217	100	60 / 60	plus

Contig Sequence (1228 bp)

>U35_441 1228 Hv_44K_v2
TCGAGCACTGTTGGCAAATCCTGCGCGCTCCAACAGACGTCCTAGCTGCCACTCCGCCGC
CCGCGTCAGGGACCTCACCGTCACACCGGCGAAGCAAAACCGGCACCCATGGCGCTCGCC
TCCACCTCCGCCACCGCCTCCGCGGCCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGT
GCGCTCGCCAATGCCGCCTCCCTCGGCGCCGCCAAGCCCGTGACACGCCGCGTGGTGGTC
GTCGCCGCGGCCGCCGACAAGAAGTCGTGGATCCCCGCGTTCAAAAGCGATGCCGAGTTC
ATCAACCCGTCCTGGCTCGATGGCTCGCTCCCCGGTGACTTCGGCTTCGACCCCCTGGGG
CTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGATCCACGGGCGC
TGGGCGATGGCCGCGGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGG
TTCGAGGCCGGAGCGCAGCCTGGCGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTCGGC
ACCCAGCTGCTGCTCATGGGGTGGGTGGAGTCCAAGCGGTGGGTCGACTTCTTCAACCCG
GACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGAACTTCGCCAAC
TTCACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCCCTCGGCCTCGGTGGC
GAGACCAAGGACGGCATCTACATCCCCGACACCGAGAAGCTTGAGCGGCTCAAGGTGGCC
GAGATCAAGCACTCGCGCCTCGCCATGCTTGCCATGCTCATCTTCTACTTCGAGGCCGGA
CAGGGCAAGACGCCGCTCGGCGCGCTCGGTCTATAAGATGATTTTTGGCTGGCGCGCGGT
GGGAGAAAGGGTTTGTTGCATCGCATCAGATCGGACGCATGGATTGAATGGGATCTGCTC
GACGTCGAACAAGCAGCAGCATTTTATCTGTGTCCGTGACTTCTTTTAGGTGGCGTGTGT
AAATCGAATGGGGAATCAAGTACTCTTTCTTTCTCCAGCGTATGTACCATGTAATATATA
GTCCGAGCTCTGTAATTTAAGGCAGAATGGGCAAAAGACATTTGATTCATTGCCAAAAAA
AAAAAAAAAAATTAGAACTTTGCTTGCATGATTTGCAACATTTGAAGGAAGCACGGAAAC
TATCAAATTCTGAAAAAAAAAAAAAAAA

Homology of Contig U35_441 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38410.1	253	7e-145	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi5g12150.1	257	2e-149
Arabidopsis v10	AT1G15820.1	258	4e-134	\| Symbols: LHCB6, CP24 \| light harvesting complex photosystem II subunit 6 \| chr1:5446685-5447676 REVERSE LENGTH=258