barSeed - Barley Seed Development Database

Probe CUST_7898_PI390587928

Source Contig U35_443

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7898_PI390587928	Hv_44K_v2	AGATTGTTAAGGAGAACTTCGACTTCAGGCCAGGCATGATCATCATCAACCTTGACCTCA	1119	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80387.1	1503	2e-24	1126 - 1185	100	60 / 60	plus	ABC01263 ABC01267 ABC35189
MLOC	MLOC_80387.2	700	2e-24	304 - 363	100	60 / 60	minus	ABC01263 ABC01267 ABC35189
MLOC	MLOC_80387.3	1542	2e-24	239 - 298	100	60 / 60	minus	ABC01263 ABC01267
JLOC1	JLOC1_53521.1	1801	8e-25	1213 - 1272	100	60 / 60	plus
Harvest21	ABC01263	1567	3e-25	1091 - 1150	100	60 / 60	plus	ABC01263
Harvest35	U35_443	1597	3e-25	1120 - 1179	100	60 / 60	plus

Contig Sequence (1597 bp)

>U35_443 1597 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCCCCCTACGCCGTGCTGTGCTCGAGTGTCAACGTCATCC
CGTAGCCCCGCCGCCGCCTCCGCCACAAGCGAACAAGGCCAAAGAAGATGGCTGAAGTTG
AAACCTTTCTCTTCACATCTGAGTCTGTCAATGAGGGGCACCCTGACAAGCTCTGTGACC
AGATATCTGATGCTGTGCTAGATGCATGCCTGGCTGAAGATCCTGACAGCAAGGTTGCTT
GTGAGACATGCACCAAGACCAACATGGTCATGGTTTTCGGTGAGATCACTACCAAGGCCA
ATGTTGATTATGAGAAGATTGTCAGGGACACTTGCCGTGGCATTGGTTTTGTGTCCAATG
ATGTAGGGCTTGATGCTGACCACTGCAAGGTACTTGTCAACATTGAGCAGCAGTCCCCTG
ACATCGCTCAGGGTGTCCATGGCCACTTTACCAAGCGGCCTGAGGAGATTGGCGCTGGTG
ACCAGGGCCATATGTTTGGATATGCAACTGATGAGACTCCTGAGTTCATGCCCCTCAGCC
ATGTTCTTGCTACCAAGCTTGGAGCTTGTCTCACCGAGGTTCGCAAGAACGCGACCTGCC
CGTGGTTGAGGCCTGATGGCAAGACCCAGGTGACTGTGGAGTATCACAATGACAATGGTG
CCATGGTCCCTATACGTGTCCACACTGTGCTCATCTCTACCCAGCATGATGAGACAGTGA
CCAACGATGAGATTGCTGCTGATCTGAAGGAGCATGTGATTAAGCCTGTCATCCCAGAGC
AGTACCTTGATGAGAATACCATCTTCCATCTCAACCCATCTGGCCGCTTTGTCATTGGTG
GACCTCATGGCGATGCTGGTCTCACTGGCAGGAAGATCATCATTGACACTTATGGTGGCT
GGGGAGCTCATGGTGGAGGCGCTTTCTCTGGCAAGGACCCAACCAAGGTTGACCGCAGTG
GTGCATATATTGCAAGGCAGGCGGCGAAGAGCATTGTCGCCAGTGGCATTGCCCGCCGCT
GCATCGTCCAGGTGTCTTATGCTATTGGCGTGCCTGAACCACTCTCTGTCTTTGTTGACA
CATACGGCACGGGCAAGATCCCTGACAAGGAGATCCTCGAGATTGTTAAGGAGAACTTCG
ACTTCAGGCCAGGCATGATCATCATCAACCTTGACCTCAAGAGGGGCGGGAGCGGGCGCT
ACCTCAAGACGGCGGCATACGGGCACTTCGGCAGGGATGGCGCGGACTTCACCTGGGAGG
TTGTGAAGCCCCTCAAGTGGGAGAAGCCTTCTGCCTGAGCAAACACTTAGCGAAGCCTCT
GAATAAAATTAGTTTTACCTGTCGCAGCAAGTAATATCTCTATTCATTGCTCCAGTGCTG
CAACGGTGCAAGTCTTTTTTTTTCAGTGTGTTTAGAGGTGCATGTATCGTGGGTGTGCTA
CTTGTGTTCTTATCTGCTCAAGTCATGGTAATGGTGACGACAAGATTGAAACTATCCAAG
AAATATAGCTCTCCACTCTTTGGTAAAAAAAAAAAAAAAAACAACTCTGTTCAGCATGTA
TGCGATTTCTTTTCGTTCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_443 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g18860.1	397	protein\|S-adenosylmethionine synthetase, putative, expressed
Brachypodium v1_2	Bradi2g11250.1	397
Arabidopsis v10	AT4G01850.1	393	\| Symbols: SAM-2, MAT2, SAM2, AtSAM2 \| S-adenosylmethionine synthetase 2 \| chr4:796298-797479 REVERSE LENGTH=393