barSeed - Barley Seed Development Database

Probe CUST_7893_PI390587928

Source Contig U35_448

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7893_PI390587928	Hv_44K_v2	TGCTTTTATTGCTATATAAAGAAAATAGCTCCAGCATAGTCGGAGCAGCGCTCCAAAAAA	1598	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.148	3.625	1.145	0.782	0.184	0.377
Raw	265.382	477.871	132.976	158.686	11.360	26.238

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71895.1	2465	3e-21	227 - 280	100	54 / 54	minus	ABC02783
JLOC1	JLOC1_47802.1	2070	2e-21	1848 - 1901	100	54 / 54	plus
Harvest35	U35_448	1700	3e-25	1599 - 1658	100	60 / 60	plus

Contig Sequence (1700 bp)

>U35_448 1700 Hv_44K_v2
ATCTCGACCCGGTCAGCTGATTGAAGCAGAGAGAAGCAGTTCAGTATGGCTCGCCTTCCC
TGCTCACCCCTCCTCCTCCTCCTCGTCTTGTCGTCGCAGCTCGCCCTGCTCGTCGCCGGC
GAGTTCCTCCGCCTGCCGTCCGAGAAGGACGTCGTCGGGACGAGATGGGCCGTCCTCATC
GCCGGCTCCAACGGCTACTACAACTACCGTCACCAGGCGGACGTGTGCCACGCGTACCAG
ATCATGAAGAAGGGCGGGTTGAAGGATGAGAACATCATCGTCTTCATGTACGACGACATC
GCTAACAACCGCGACAACCCCAGGCCCGGGGTCATCATCAACCACCCCAAAGGCGGCGAC
GTCTACGCCGGAGTCCCCAAGGACTACACGGGGGCGGACGTGAACACCAACAACTTCCTC
GCCGCCCTGCTCGGCGACAAGTCCAAGCTCACCGGCAGCGGCAGCGGCAAGGTCGTCAGC
AGCGGCCCGGACGACCACATCTTCGTCTACTACGCCGATCACGGCGGCCCAGGGATCCTT
GGGATGCCGGAGGACGAGGAGTACCTGTACGCGAACGACCTGGTGCGGACGCTGGAGAAG
AAGCACGCCGGCGGGGCCGGGTACAAGAGCCTGGTCTTCTACCTGGAGGCCTGCGAGTCC
GGGAGCATCTTCGAGGGCCTCCTCCCGGGCAACATCAGCGTGTACGCGACCACGGCGGCC
AACGCGGAGGAGAGCAGCTGGGGCACCTACTGCCCCGGCGACGACGAGGGCGCGCCTCCG
CCGGAGTACGACACATGCCTCGGCGACCTCTACAGCGTCGCCTGGATGGAGGACAGCGAC
GCGCACAACCTCAACGCCGAGTCCCTCAAGCAGCAGTACGAGCGGGTCAGGAACCGGACG
TCGGCGGACGGGACGTACAGCCTCGGCTCCCACGTCATGCAGTACGGCGACCTGGGCCTC
AACGACCAGAGCCTCTTCCAATACATCGGCACCAATCCTGCCAACGACAACGCCACCTTC
GTCCAGAGCTCCTCCTCCTCGAGGCAGCTGCCGGGCGCCAGAGTGAACCAGCGGGACGCC
GACCTCGTCCACTTCTGGCACAAGTACCGGAGGTCGGCGGAAGGGTCGGCCGAGAAAGTC
GAGGCACGGAGGCGGCTGGTGGAGACGATGGCGCGGCGGTCTCGCGTGGACAGCAGCGTG
GAGCTGATCGGCGGCCTCCTGTTCGGCTCGGAGGAAGGTGCCAAGGTTCTCGGCACCGTG
CGGCCGGCAGGGCAGCCTGTGGTGGATGACTGGGGCTGCCTCAAGTCTGTGGTGCGGAGG
TTCGAGGAGCGGTGCGGCCCGCTGACGCAGTACGGGATGAAGCACATGCGGTCGCTAGCC
AACATCTGCAACGCCGGCGTCCGGGAGGAGGTCATGGACAAGGCTGCGTCTCAGGCGTGC
GCTGCTAGTCCTTCATCCTTGATCATCTGATCAGACTGTGTGATCGATCCATGTCACATC
AGTCATCCAAAATATGGTGTGGTCGATATATACGGTCGTGATTGCTGTAAATACTACAGT
ACATGCTGCACAGCAAGTATGTAATTGCTGTAAATATATGCTTTTATTGCTATATAAAGA
AAATAGCTCCAGCATAGTCGGAGCAGCGCTCCAAAAAAAAAAAAAAAGGCTCGTTTTAGC
TCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_448 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g37910.1	502	protein\|vacuolar-processing enzyme precursor, putative, expressed
Brachypodium v1_2	Bradi4g30110.1	468
Arabidopsis v10	AT4G32940.1	494	\| Symbols: GAMMA-VPE, GAMMAVPE \| gamma vacuolar processing enzyme \| chr4:15900557-15903161 REVERSE LENGTH=494