barSeed - Barley Seed Development Database

Probe CUST_7892_PI390587928

Source Contig U35_449

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7892_PI390587928	Hv_44K_v2	CCCCACTGTAATTTTTGGCATGTGCAAGTGTCCTGATATATATACATCAACTTTTTCCTG	1178	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.192	4.375	0.924	0.770	0.927	0.894
Raw	34.159	61.622	10.268	12.792	4.536	5.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249803.1	1262	2e-24	1181 - 1240	100	60 / 60	plus	ABC10709
MLOC	MLOC_5336.2	1887	2e-24	870 - 929	100	60 / 60	minus	ABC10709
MLOC	MLOC_5336.1	3636	2e-24	2312 - 2371	100	60 / 60	minus	ABC10709
MLOC	MLOC_5335.1	3537	2e-24	1004 - 1063	100	60 / 60	minus	ABC10709
JLOC1	JLOC1_3425.1	2256	8e-25	1321 - 1380	100	60 / 60	plus
JLOC1	JLOC1_3424.3	1891	8e-25	1002 - 1061	100	60 / 60	minus
JLOC1	JLOC1_3424.2	1836	8e-25	947 - 1006	100	60 / 60	minus
JLOC1	JLOC1_3424.1	1883	8e-25	994 - 1053	100	60 / 60	minus
Harvest35	U35_449	1257	3e-25	1179 - 1238	100	60 / 60	plus

Contig Sequence (1257 bp)

>U35_449 1257 Hv_44K_v2
AACCAACCAACCACCCCCCTCATTAACAAAGCACCCAACCCTCCAACCTTGAGAAGGTGA
GAGCTCAGCTGGGAGAAGAGAAGAGCAGGAAAGGGAGATCATCATCAGGCTCTGAAGAAA
CGGAGAAAAAGTAACTAACCGGTGGTTCTTGCCTCACGCCGGTGGCCATGGCCACCGTCG
GGCCGCCTGGCGCCTTCCGGAGGATCACCGTGCACTACAGCACCGCCGGCGACGATGCGA
ACCACGATGACTTCCTCGAGTATGTGATCGGCGATGTTCTCCAACACCAGGACGGCCTGC
ACCAGTCCTGGAGCACACATTGCTGCCATGGGGAGAGCAGCAGAGGCACAGCAGCAGAAA
CCTCCGGAACTTCAGATGAACAGATCGCGGCCGACCTCAAATACGCCAGGATGCTGCAGG
ATATGGAGGATCTGGATGTGGACACGCCTCCCAACGACGATGAGGAAGACGATATAAGCT
GTGTGCCTTCCCCATCCGACACCGATGACGATGATGATCGCGGCGACGAAGAGGAGGCTG
CTAGGCAGGATGATGATGACAACGACATCGACGACGATGTTGATCCGGACAACATGACAT
ATGAGGAAAGGCAGGAACTAGTGGAATCAGTGGGAAATGAGAGCAGAGGTTTGTCTGATG
AGCTCATGTCATATTTGGTGCCATGGAAGTACAAGTCAGGATCAGGGTTCTTTTCAAAGA
AGACAAACAATGATGAGACTTGCACTGTGTGTCTGTCAGCTTTCAAAAACAGGGAGAACA
TCATAACCTTGCCCTGCAAACATAATTACCATGCAACTTGCATCACCAAGTGGCTCAAGA
TCGACAAGACCTGCCCAGTTTGCAAATATGAAGTGTTTGGACCCTCCTAACACGTCATCA
GCTGCCAATCGAAGCTCACAAGGCGGCGACACGTCATCATGCTGCTCGCTTGCCGCATCT
ACTCATTCAGTACAAAAGAAAGAAAAGATGAAAAAAAAACAGATACTTAGTTGGATTTCA
CTGTCAGAAAAAAAAAAAAAAAAAAACAAAAAAAACACAGATTCTAGTTTAAGTTCAAAA
GCAGATACTTAGTTGGATTTCACTGTCAAAGGTAGAGAAAAGAAAGGAAAAAAAAAAACA
GATTTTTAGTTTAAGTTCACTGTCCCAAAGGGTGTCTCCCCCACTGTAATTTTTGGCATG
TGCAAGTGTCCTGATATATATACATCAACTTTTTCCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g03580.2	262	1e-64	protein\|zinc RING finger protein, putative, expressed
Brachypodium v1_2	Bradi1g49490.3	249	1e-93
Arabidopsis v10	None