barSeed - Barley Seed Development Database

Probe CUST_7888_PI390587928

Source Contig U35_453

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7888_PI390587928	Hv_44K_v2	TGGTGTCATGATGTCACGTCATGTCTACGCAATATATTAGTTCGATGATGTTTCTGCTGC	2205	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78867.2	4650	7e-23	4498 - 4557	98	59 / 60	plus	ABC00319 ABC00326 ABC00873 ABC39134 ABC39277
JLOC1	JLOC1_52556.3	2091	4e-23	1878 - 1937	98	59 / 60	plus
JLOC1	JLOC1_52556.1	2531	4e-23	2318 - 2377	98	59 / 60	plus
Harvest21	ABC00326	2282	3e-25	2201 - 2260	100	60 / 60	plus	ABC00326
Harvest21	ABC46964	330	1e-23	25 - 84	98	59 / 60	minus
Harvest21	ABC39277	409	1e-23	18 - 77	98	59 / 60	minus	ABC39277
Harvest35	U35_453	2289	3e-25	2206 - 2265	100	60 / 60	plus

Contig Sequence (2289 bp)

>U35_453 2289 Hv_44K_v2
CTTNCAACCCTAGTCCTCCCTCCCTCCTCAACACGCCGCCGCTCCCCCTCCTCCGGAAGA
AAAACCCTAGAGAGCTTTCAAGCTCCCCGGAGCGCGAGAGATGGCGGCGAAGGGCGATGG
GCCGGCTATCGGCATCGACCTCGGCACGACGTACTCGTGCGTCGGCGTGTGGCAGCACGA
CAGAGTCGAAATCATCGCCAATGACCAGGGCAACCGCACCACGCCGTCGTACGTGGCCTT
CACCGACTCCGAGCGCCTCATCGGTGACGCCGCCAAGAACCAGGTGGCGATGAACCCCAT
CAACACCGTCTTCGATGCCAAGCGTCTCATTGGCCGGAGATTTACCGACTCTACTGTCCA
GAGTGATATTAAGCTGTGGCCCTTCAAGGTTGTTGCTGGACCTGGTGACAAGCCTATGAT
TAATGTTCAGTACAAGGGTGAGGAGAAGCAGTTTGCAGCTGAGGAGATATCTTCTATGGT
CCTCATCAAGATGCGTGAGATTGCTGAAGCTTTCCTTGGCAGCACTGTGAAGAATGCTGT
TGTCACTGTACCTGCATACTTCAATGACTCGCAGAGGCAGGCTACCAAGGATGCTGGTGT
CATTGCTGGCATCAATGTTCTCCGTATCATCAATGAGCCAACAGCTGCTGCCATTGCTTA
CGGTCTTGACAAGAAGGCTTCTAGTGTTGGTGAGAAGAATGTCCTCATCTTTGACCTTGG
AGGTGGTACCTTTGATGTCTCTCTCCTCACCATTGAGGAGGGTATCTTTGAGGTTAAGGC
CACAGCTGGTGATACTCATCTTGGTGGTGAGGACTTTGACAACAGGATGGTCAACCACTT
TGTTCAGGAGTTCAAGAGGAAGAACAAGAAGGACATCAGTGGCAACCCGAGAGCTCTTCG
GAGGCTGAGGACATCCTGTGAGCGGGCAAAGAGGACTCTCTCCTCCACTGCGCAGACTAC
CATCGAGATTGACTCGCTGTTTGAGGGCATTGACTTCTACTCCACCATCACCCGGGCCAG
GTTTGAGGAGATGAACATGGATCTGTTCAGGAAATGTATGGAGCCAGTGGAGAAGTGTCT
CAGGGATGCAAAGATGGACAAGAGCACCGTGCATGATGTTGTCCTTGTTGGTGGTTCCAC
TAGGATTCCCAAAGTGCAGCAGCTTCTCCAGGACTTCTTCAACGGCAAGGAGCTCTGCAA
GAGCATTAACCCGGATGAGGCTGTTGCCTATGGCGCTGCCGTCCAGGCTGCCATCTTGAG
CGGAGAGGGCAATGAGAAGGTCCAGGACCTGCTGCTATTGGATGTCACTCCTCTTTCTCT
TGGTCTGGAGACAGCCGGCGGTGTGATGACGGTCTTGATCCCAAGGAACACCACCATCCC
CACCAAGAAGGAGCAGGTCTTCTCCACCTACTCGGACAACCAGCCTGGTGTGCTCATCCA
GGTGTACGAGGGTGAGAGGACCAGGACCCGTGACAACAACCTCCTAGGCAAGTTCGAGCT
GTCCGGCATCCCTCCTGCACCCAGGGGAGTTCCCCAGATCACTGTCTGCTTTGACATCGA
TGCCAATGGTATCCTGAACGTGTCTGCTGAGGACAAGACGACTGGGCAGAAGAACAAGAT
TACCATCACCAATGACAAGGGCAGGCTGAGCAAGGAGGAGATCGAGAAGATGGTCCAGGA
GGCTGAGAAGTACAAGTCCGAGGATGAGGAGCACAAGAAGAAGGTGGAGTCCAAGAACGC
CCTGGAGAACTACTCTTACAACATGCGCAACACCATCAAGGACGAGAAGATCGCCTCCAA
GCTGCCGGCCGACGACAAGAAGAAGATCGAGGAGGCCATCGATGCTGCCATCCAGTGGCT
GGACACGAACCAGCTTGCTGAGGCGGACGAGTTTGAAGACAAGATGAAGGAGCTGGAGGC
CCTGTGCAACCCCATCATCGCCAAGATGTACCAGGGTGCTGGTGCCGACATGGAGGGTGG
CATGGACGATGACACCCCTGCTGCATCCGGCGGCCCTGGCCCCAAGATCGAGGAGGTCGA
CTAAACAGTCGATGTTCTGTGGCAGAGGCGGTGAAGCCTGCTGCTAGTTATTATTATATC
GTGTCTGTGTTATCTGAGACTTGGTTGCGGTGGTATTTTGCTCCGTGTGGGTGGTCGTAG
TTATTCCGTGCGAGTTGGAACATTCGAGGTAACATCAGTGGATTATGGTGTCATGATGTC
ACGTCATGTCTACGCAATATATTAGTTCGATGATGTTTCTGCTGCAAAAAAAAAAAAAAA
AAAAAAAAA

Homology of Contig U35_453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g47760.1	650	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi4g04220.1	649
Arabidopsis v10	AT5G02500.1	651	\| Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 \| heat shock cognate protein 70-1 \| chr5:554055-556334 REVERSE LENGTH=651