barSeed - Barley Seed Development Database

Probe CUST_7885_PI390587928

Source Contig U35_456

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7885_PI390587928	Hv_44K_v2	TGCTCCCTGTATAACCGCTAACCGATCGACATATAGCCGTAATCGTATATACTTCTTAAA	1421	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.318	0.615	0.588	1.607	1.914	2.443
Raw	134.857	421.548	333.017	1482.011	585.289	827.497

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17893.1	1395	7e-23	1338 - 1394	100	57 / 57	plus	ABC00670
JLOC1	JLOC1_12365.1	2628	4e-23	1251 - 1307	100	57 / 57	plus
Harvest21	ABC00670	1478	3e-25	1405 - 1464	100	60 / 60	plus	ABC00670
Harvest35	U35_456	1495	3e-25	1422 - 1481	100	60 / 60	plus

Contig Sequence (1495 bp)

>U35_456 1495 Hv_44K_v2
GGCAAGCTTCCACCTCCTTCTCCGCTCTTCCCCCGTCCGTCCTGCCTGCTCATTATCGGT
CCACCGATCGCTCAGCAGAAGAGAGAGGAGAGGAGAGGAGAGAAGAGAGAGGAGGAGCAC
GACGAGGATGAGGGGGTGGAGAGAGGATGTGGTGGCGCTGTCGCTGGAGGCGCGCGGCCC
CGGCGACGACCGGCCGGAGAAGCCGCGCCGCTACGGGGTCACGGAGATGAGGAGCCCCTG
CTACTCCTTCCGCCCCGCCCACCACGCGCTCCAGGAAATATTGGATTCCCTCGGTCCTTT
TGTTGATGGCCTGAAGTTCTCCGGTGGATCTCATAGTTTGATGGGAAAGGAACTGATCAG
AGAGATCACTGATTTAGCGCACAAGCATGACATGTATGTGAGCACTGGTGATTGGGCAGA
GCATCTTCTGCGCCAAGGACCCTCTTCTTTCAAGCAATATGTAGAGGAATGCAAAGAGTT
AGGTTTTGACACCATTGAGCTCAACGCTGGATCTCTCAAGCTTCCTGAAGAGGCTATCCT
GAGACTAGTCCGCCTCATAAAGAACACTGGCTTGCGAGCCAAGCCCCTGTTTTCGGTCAA
GTTCGACAGTTCTGAGATGCCTGCAGCTGGTGATAGGGCATTTGGGGCTTACATAGCTCC
AGTGAAGCGGAGCTCAGAAAGAGTCGAAGACGTTGACCTGCTGATACGGAGGGCCGAGAG
ATGCCTGGAGGCAGGTGCAGATATGATCATGATCGACGCAGACGACGTCTGCCAGCGCAC
GGATTCCCTCAGGGCGGACATCATCGCGAAGATCGTTGGCCGGCTCGGGCTCGAGAAGAC
CATGTTCGAGACATCCAATGCCAACACCTCCGAGTGGTTCGTCAAACGATACGGCCCACG
GGTGAACCTCTTCGCCGACCACTCCGAGGTGATGAACCTGGAGCGCCTCCGCGGCTTGGA
CGTGCGCCGGAGGGTCCGCCCCTTGCTCCCTTCGCCGTTCTTCCTGATGTGATGACGGCC
TTGCTGAGTAATGATATGGGACTGGGGCCTAAGCGAAGTGTTGATGGAGCTGAGTTTTCT
GTACTGGGAGGAGTTGTGTGAACTGTACTGAGGGACCTAAGCGCTGTGTTGAAGTAGTAG
CGAGTCCCGGAGCCGAGGCGGCAGTGTGTTGGTACTTGGTAGCAGGTAATAAGGATGAGG
CTGTGTGTGTATGATCTCGGGGTGATTTGCACTGGGAGTAAGTCCTACTACTTGTTTCGA
ATGTGTGTGAATGTGATGATGCATCTAGAGCAAGATTGCAAGGATTGCTGGGATGAACAA
AAGAGATGACGTGTACACCGATTCCTGAAGACGACGGGAACAATACGGGCCTTCGCTGCA
TTGCTTAACAGCAACTCTAGCTGATCCCTGTAATAACCAGTTGCTCCCTGTATAACCGCT
AACCGATCGACATATAGCCGTAATCGTATATACTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46900.1	303	4e-155	protein\|phosphosulfolactate synthase-related protein, putative, expressed
Brachypodium v1_2	Bradi1g32990.1	300	2e-160
Arabidopsis v10	AT4G21320.1	286	5e-113	\| Symbols: HSA32 \| Aldolase-type TIM barrel family protein \| chr4:11340492-11341732 FORWARD LENGTH=286