barSeed - Barley Seed Development Database

Probe CUST_7859_PI390587928

Source Contig U35_30602

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7859_PI390587928	Hv_44K_v2	TAAATCTGAAGATGGTCACTGGACTCCTCTCACTGAGTACAGCGGATCACGAACTACTAT	168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32662.1	3145	7e-23	1451 - 1510	98	59 / 60	minus	ABC14350
MLOC	MLOC_32662.2	3287	7e-23	1373 - 1432	98	59 / 60	minus	ABC14350
JLOC1	JLOC1_21265.1	3463	4e-23	1734 - 1793	98	59 / 60	plus
Harvest21	ABC30591	258	3e-25	169 - 228	100	60 / 60	plus
Harvest35	U35_30602	258	3e-25	169 - 228	100	60 / 60	plus

Contig Sequence (258 bp)

>U35_30602 258 Hv_44K_v2
ACCTGATGCCATTCCCAGCGCGCCGTCTGCCGGAGGGAAATCTGTCGGGGCTATCGTAGG
TGCAGCTGTTGGTGGTTTCGCAGTGCTACTGGTAGCATGTTTTGGCGTTTGCATCATCTG
CAAACGGAAGAACAACATGAAGAAGAAGATATCCAAGGAACCTGGTGGTAAATCTGAAGA
TGGTCACTGGACTCCTCTCACTGAGTACAGCGGATCACGAACTACTATGTTGGGAAACAC
GGCCACCACCGGGTCGAC

Homology of Contig U35_30602 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None