barSeed - Barley Seed Development Database

Probe CUST_7854_PI390587928

Source Contig U35_16312

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7854_PI390587928	Hv_44K_v2	AGATTGTTGAACACAGTTATCGGATGTGGTGGGGGCTCTGTATCTCCACTGTACAAAAAA	1818	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.272	1.314	1.282	1.063	0.483	0.465
Raw	17401.733	27171.757	23747.967	29785.467	5048.047	5187.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65087.5	1970	3e-22	1895 - 1950	100	56 / 56	plus	ABC06461 ABC34152
JLOC1	JLOC1_42801.2	2057	1e-22	1968 - 2023	100	56 / 56	plus
JLOC1	JLOC1_42801.1	2105	1e-22	2016 - 2071	100	56 / 56	plus
Harvest21	ABC06461	1884	3e-25	1819 - 1878	100	60 / 60	plus	ABC06461
Harvest21	ABC06462	711	2e-21	631 - 686	98	55 / 56	plus
Harvest35	U35_16312	1889	3e-25	1819 - 1878	100	60 / 60	plus
Harvest35	U35_16313	704	5e-23	623 - 678	100	56 / 56	plus
Harvest35	U35_16314	1041	2e-21	974 - 1029	98	55 / 56	plus

Contig Sequence (1889 bp)

>U35_16312 1889 Hv_44K_v2
GCATTCTCCGTCGAACGTGTGTTTGGTGGAGTATTATTGGCTATGTGTACAAATGATTTC
ATCTGCTTTTACGACTGGGCGGATTGCAGGTTGATACGTCGAATTGATGTCAATGTGAAA
AATCTCTACTGGGCTGACAGTGGTGATTTGGTGACAGTTGCAAGTGATACATCATTCTAC
ATTTTGAAGTACAATAGGGATGTTGTATCTTCTCATTTGGACGGAGGGGGTTCAGTTGGT
GAGGAGGGTGTGGAAGATGCCTTTGAACTGCTTCATGAGATCAATGAACGCATCCGAACT
GGGCTATGGGTTGGCGATTGTTTTATCTACAATAATTCTTCATCGCGGCTTAATTACTGT
GTAGGAGGAGAGGTCACAACCTTGTTTCACCTGGACCGGCCAATGTATTTACTAGGATAT
CTTGCTAACCAGAGCCGTGTCTATCTTATTGACAAGCAATTTAATGTTGTTGGGTACACT
TTGCTCCTTAGTTTGATTGAGTATAAAACACTAGTGCTGCGTGGGGATTTTGATCGTGCA
AATGATATTTTGCCATCTATACCAAAGGAACAATATGACAGCGTGGCACATTTCTTGGAA
TCACGGGGCATGTTGGAGGAAGCCCTTGAGATAGCAACAGACTCTAATTACAGATTTGAC
CTGGCAGTTCAGCTTGGCCGCGTTGATGATGCAAAGGCAATTGCTATTGAAGTGCAAAGT
GAGACCAAGTGGAAGCAGTTAGGGGAGTTAGCTATCTCAACTGGAAAGCTCGAGATGGCA
GATGAGTGCCTTCTGCATGCACTAGATCTCAGTGGTCTATTGCTTTTGTATTCATCCATT
GGGGATGCTGAAGGGATAACAAAATTGGCATCTATGGCTAAAGAACAAGGAAAGAACAAT
GTTGCGTTCCTTTGTTTGTTCATGCTAGGCAAGTTGGAGGAATGCCTTCAATTGTTGATT
GAAAGCAATCGCATTCCGGAAGCAGCATTGATGGCGAGATCTTATCTTCCGAGCAAAGTC
CCTGAGATTGTAGCATTATGGAAAAAAGATCTCCAAAAGGTGAACTCAAAAGCAGCGGAG
TCATTGGCAGATCCTGATGAGTACCCAAACCTATTTGAAGACTGGCAGATTGCTCTCAAT
GTAGAAGCTACTGTCGCCCCCAAAAGGGGTATCTATCCGCCTGCTGAGGAATACATGATT
CATGCTGAAAGGCCCAACGAGAGTCTTGTGGAAGCTTTCAAGAACATGCATGTACAAGAA
GAGGAGGACGTACATGAAGAGGATGCACACGATGAGGAGGAGCTATCAAATGAAAATGAT
ACTGTTCAAGAGGTTTTCGAAGATGACGGAGCAGAAGAAAGCCAAGAAGATGCTGTTGAG
GTTGAGGCTGATGGTTCTACTGATGGCACTATCCATGTGAATGGAAATGATAGTGAGGAA
CAGTGGGTGCTGACTCCTGACCAATAGTGGATAGTGGAACAGCAACCTGCTTAAGAGGTT
CAGTTTGTAAAGGTTTGTTACTGGGATGATGTAAAACCCGTTTCTCCTCATTCTATAAGC
TTTCATGTGATCTAGGATTGGCTTATCCGGTTACAGTCTGGGCAGCAATTTAATTAGCAC
TTTAGTTCATGTTATAGAAAATTTTGCGATTCATTTCAAATAGATAGTCATCCGGGACGT
TTCACAGGGTTGTAAGAGGCTGTTTGTTTGGAGATGGATTTTGTTTGGTGGTTGGAAAGG
TGCTATATGTTACACTAAGTACATAGGGCAGTCGCGTGTCAGTTTGGGAACATTATCCCG
GTCCCGTATGTAAACCTCAGATTGTTGAACACAGTTATCGGATGTGGTGGGGGCTCTGTA
TCTCCACTGTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_16312 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g11830.2	908	protein\|coatomer subunit beta, putative, expressed
Brachypodium v1_2	Bradi3g07926.3	920
Arabidopsis v10	AT1G52360.2	970	Coatomer, beta subunit \| chr1:19499420-19505397 FORWARD LENGTH=970