barSeed - Barley Seed Development Database

Probe CUST_7851_PI390587928

Source Contig U35_16313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7851_PI390587928	Hv_44K_v2	CACAGTTATCGGATGTGGTGGGGGCTCTGTATCTCCACTGTACAAGTTTGTTTGAAAAAA	633	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65087.5	1970	2e-23	1906 - 1963	100	58 / 58	plus	ABC06461 ABC34152
JLOC1	JLOC1_42801.2	2057	1e-23	1979 - 2036	100	58 / 58	plus
JLOC1	JLOC1_42801.1	2105	1e-23	2027 - 2084	100	58 / 58	plus
Harvest21	ABC06462	711	6e-22	642 - 701	97	58 / 60	plus
Harvest35	U35_16313	704	3e-25	634 - 693	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_16313 704 Hv_44K_v2
CATGCATGTACAAGAAGAGGAGGACGTACATGAAGAGGATGCACACGATGAGGAGGAGCT
ATCAAATGAAAATGATACTGTTCAAGAGTTTTTCGAAGATGACGGAGCAGAAGAAAGCCA
AGAAGATGCTGTTGAGGTTGAGGCTGATGGTTCTACTGATGGCACTATCCATGTGAATGG
AAATGATAGTGAGGAACAGTGGGGTACGAACAAAGAAGAACCATCAGCATAAAAGCTGTA
GTTGAGCAAGTTGCTGACTCCTGACCAATAGTGGATAGTGGAACAGCAACCTGCTTAAGA
GGTTCAGTTTGTAAAGGTTTGTTACTGGGATGATGTAAAACCCGTTTCTCCTCATTCTAT
AAGCTTTCATGTGATCTAGGATTGGCTTATCCGGTTACAGTCTGGGCAGCAATTTAATTA
GCACTTTAGTTCATGTTATAGAAAATTTTGCGATTCATTTCAAATAGATAGTCATCCGGG
ACGTTTCACAGGGTTGTAAGAGGCTGTTTGTTTGGAGATGGATTTTGTTTGGTGGTTGGA
AAGGTGCTATATGTTACACTAAGTACATAGGGCAGTCGCGTGTCAGTTTGGGAACATTAT
CCCGGTCCCGTATGTAAACCTCAGATTGTTGAACACAGTTATCGGATGTGGTGGGGGCTC
TGTATCTCCACTGTACAAGTTTGTTTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None