barSeed - Barley Seed Development Database

Probe CUST_7849_PI390587928

Source Contig U35_16314

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7849_PI390587928	Hv_44K_v2	GAACACAGTTATCGGATGTGGTGGGGGCTCTGTATCTCCACTATACAAGTTTGTTTAAAA	981	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65087.5	1970	3e-21	1903 - 1963	97	59 / 61	plus	ABC06461 ABC34152
JLOC1	JLOC1_42801.2	2057	2e-21	1976 - 2036	97	59 / 61	plus
JLOC1	JLOC1_42801.1	2105	2e-21	2024 - 2084	97	59 / 61	plus
Harvest21	ABC06462	711	6e-22	639 - 698	97	58 / 60	plus
Harvest35	U35_16314	1041	3e-25	982 - 1041	100	60 / 60	plus
Harvest35	U35_16313	704	6e-22	631 - 691	97	59 / 61	plus

Contig Sequence (1041 bp)

>U35_16314 1041 Hv_44K_v2
TTTTTTTTTTTTTTTGCTAATAATCTTCCTAATTTCCCACTGAAATTGGTCTTAAAATGA
ATTCCAAACTTCTTTCTAGACTTACGACAACAGAATATGGACTACATCAAATACACAATC
ACATCCTGAACTGTATGACACCATGAACAGAAAAAGTGGAAAGTCATATATAACACTACA
AAGGCAGTCATTGGCAGATCCTGATGAGTACCCAAACCTATTTGAAGACTGGCAGATTGC
TCTCAATGTAGAAGCTACTGTCGCCCCCAAAAGGGGTATCTATCCGCCTGCTGAGGAATA
CATGATTCATGCTGAAAGGCCCAACGAGAGTCTTGTGGAAGCTTTCAAGAACATGCATGT
ACAAGAAGAGGAGGACGTACATGAAGAGGATGCACACGATGAGGAGGAGCTATCAAATGA
AAATGATACTGTTCAAGAGGTTTTCGAAGATGACGGAGCAGAAGAAAGCCAAGAAGATGC
TGTTGAGGTTGAGGCTGATGGTTCTACTGATGGCACTATCCATGTGAATGGAAATGATAG
TGAGGAACAGTGGGGTACGAACAAAGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAA
GTTGCTGACTCCTGACCAATAGTGGATAGTGGAACAGCAACCTGCTTAAGAGGTTCAGTT
TGTAAAGGTTTGTTACTGGGATGATGTAAAACCCGTTTCTCCTCATTCTATAAGCTTTCA
TGTGATCTAGGATTGGCTTATCCGGTTACAGTCTGGGCAGCAATTTAATTAGCACTTTAG
TTCATGTTATAGAAAATTTTGCGATTCATTTCAAATAGATAGTCATCCGGGACGTTTCAC
AGGGTTGTAAGAGGCTGTTTGTTTGGAGATGGATTTTGTTTGGTGGTTGGAAAGGTGCTA
TATGTTACACTAAGTACATAGGGCAGTCGCGTGTCAGTTTGGGAACATTATCCCGGTCCC
GTATGTAAACCTCAGATTGTTGAACACAGTTATCGGATGTGGTGGGGGCTCTGTATCTCC
ACTATACAAGTTTGTTTAAAA

Homology of Contig U35_16314 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g07926.1	923	6e-59
Arabidopsis v10	None