- Probe CUST_7841_PI390587928
- Source Contig U35_30281
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_7841_PI390587928 | Hv_44K_v2 | ACATGGGAGCTGAAGATAGCCTCATGATTACGAAGTGTCAAATAAAGGGAATGAATAATT | 304 | GeneList: black MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.016 | 0.091 | 0.871 | 2.806 | 2.089 | 4.331 |
Raw | 21.626 | 277.699 | 2452.473 | 11045.933 | 3372.220 | 7512.063 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
JLOC1 | JLOC1_36321.1 | 607 | 8e-25 | 373 - 432 | 100 | 60 / 60 | plus | |
Harvest21 | ABC30116 | 364 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus | |
Harvest35 | U35_30281 | 364 | 3e-25 | 305 - 364 | 100 | 60 / 60 | plus |
Contig Sequence (364 bp)
>U35_30281 364 Hv_44K_v2 CAAACCAAGTGGAGAAAGAAAAGGAAGTGTGCTTGAAAGTTGAAACTTCGCCAAACACCA CCGATCATGGGTGCGAGAAATGCTATCATGTGCTTCGTGTTGATTCTTGTATTGTTCCCG GATAATGGATTCGCAGGATGCTGGGTGAGTGCCAATGGCGGCCCACTGTGCATAGGCTTT CTGTGCAAGGTGACTTGCTTGATTGCGGAAAAGATGTTTAATTGCGTTCTCAAGGAACAC AGGTGCGACGGGCCACCACTCAATAGCGAATGCTACTGCTATCTCTGCGACAAATAGTAT GTTAACATGGGAGCTGAAGATAGCCTCATGATTACGAAGTGTCAAATAAAGGGAATGAAT AATT
Homology of Contig U35_30281 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |