barSeed - Barley Seed Development Database

Probe CUST_7840_PI390587928

Source Contig U35_30282

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7840_PI390587928	Hv_44K_v2	AAGAAGCGGCTGTTCCTGCTGGACTACCACGACGTGTTCCTGCCGTACGTGCACAGGGTG	55	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370754	3072	2e-24	1485 - 1544	100	60 / 60	plus	ABC23795
MLOC	MLOC_51884.2	1654	2e-24	91 - 150	100	60 / 60	plus	ABC23795
MLOC	MLOC_51885.1	4967	2e-24	31 - 90	100	60 / 60	plus	ABC23795
MLOC	MLOC_51885.2	4972	2e-24	31 - 90	100	60 / 60	plus	ABC23795
MLOC	MLOC_51884.1	1308	2e-24	91 - 150	100	60 / 60	plus	ABC23795
JLOC1	JLOC1_33174.1	2139	8e-25	313 - 372	100	60 / 60	plus
Harvest21	ABC30117	207	3e-25	56 - 115	100	60 / 60	plus
Harvest35	U35_30282	207	3e-25	56 - 115	100	60 / 60	plus

Contig Sequence (207 bp)

>U35_30282 207 Hv_44K_v2
GGGGATCCTGGAGAAGATGATGAACGGGCGCATGACGGTGGAGGAGGCGATGGAGAAGAA
GCGGCTGTTCCTGCTGGACTACCACGACGTGTTCCTGCCGTACGTGCACAGGGTGCGGGA
GCTGCCGGACACGACGCTGTACGGGTCCCGCACCGTCTTCTTCCTGAGCGACGAGGGCAC
GCTGATGCCGCTGGCCATCGAGCTGAC

Homology of Contig U35_30282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None