barSeed - Barley Seed Development Database

Probe CUST_7837_PI390587928

Source Contig U35_30285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7837_PI390587928	Hv_44K_v2	AGTAGCACTAGCTTCAGCTAGCTCCGGGCATTTTCTTGCTTCCACCACGGCAATGGCCAC	18	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355655	877	2e-24	52 - 111	100	60 / 60	plus	ABC00407 ABC00558 ABC00982
MLOC	MLOC_65823.1	610	2e-24	493 - 552	100	60 / 60	plus	None
JLOC1	JLOC1_43341.1	518	8e-25	253 - 312	100	60 / 60	plus
Harvest21	ABC30120	283	3e-25	19 - 78	100	60 / 60	plus
Harvest21	ABC29764	194	3e-25	41 - 100	100	60 / 60	plus
Harvest21	ABC29409	223	3e-25	13 - 72	100	60 / 60	minus
Harvest21	ABC00573	1065	3e-25	224 - 283	100	60 / 60	plus
Harvest21	ABC00057	1083	3e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC46842	248	2e-22	43 - 97	100	55 / 55	plus
Harvest35	U35_30285	283	3e-25	19 - 78	100	60 / 60	plus
Harvest35	U35_14407	1042	3e-25	55 - 114	100	60 / 60	plus
Harvest35	U35_14406	810	3e-25	38 - 97	100	60 / 60	plus

Contig Sequence (283 bp)

>U35_30285 283 Hv_44K_v2
GGCACACAACAGGGTCACAGTAGCACTAGCTTCAGCTAGCTCCGGGCATTTTCTTGCTTC
CACCACGGCAATGGCCACCGCTGATGTCCAGAACCCGACGGCCGCGCTGACGGAGGAGGC
GCCGGCGGTGGAGACGCCCGTGGCCGCCGAGGAGGCCGTGGCAGAGGCCGAGCCGGCGGC
GGCGGCCGAGGAGGTGAAGGAGGAGGAGGCGGCACCCGCTGCCGCCGAGCCGGAGGTGGC
GGCCGTCGCCGAGGAAGCGCCGGCTGCAGCGGAGGATGCGCCC

Homology of Contig U35_30285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None