- Probe CUST_7828_PI390587928
- Source Contig U35_42267
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7828_PI390587928 | Hv_44K_v2 | TAGTGAAGTATCCAGTGGAGTAAAAGCTTAGGGCATGTACAATGGTTGATAAGATGGTCT | 110 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.849 | 1.020 | 1.699 | 1.386 | 0.541 | 1.059 |
| Raw | 12.505 | 21.670 | 33.888 | 45.107 | 4.729 | 12.732 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_15352.2 | 698 | 8e-25 | 427 - 486 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_15352.1 | 1821 | 8e-25 | 1550 - 1609 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37821 | 586 | 3e-25 | 111 - 170 | 100 | 60 / 60 | minus | ABC37821 |
| Harvest35 | U35_42267 | 586 | 3e-25 | 111 - 170 | 100 | 60 / 60 | minus |
Contig Sequence (586 bp)
>U35_42267 586 Hv_44K_v2 TTTTTTTTTTTTTTTTTATAAACAGCTAGTTATTGAAGATAAGGCTAAGAAGTGACCCTT TGTAAAACAATTTTTTTGTCATCTCTAAATTACATGCAAGACTTGAGATAAGACCATCTT ATCAACCATTGTACATGCCCTAAGCTTTTACTCCACTGGATACTTCACTATTTTTGGAGC ATCCGTTAGAAATGTCCTAAGTTCCTTATTGCTTGATTAATGACCTCTTGGCGCAACCTC TCAGCGCGTCCTGGTGCACCCTCCCAGCTATGCCAGAAATGAAAGTACAATCAAATTCCC ACTTCGGATGGAGTCCACATAACCTGCAGAAAGGGATCAAGGAACCCAATGAAATCCTTC CAGATCAAATCAAAAACTGAACCAGGAAGAAGATATATGGACCATCATGCCATACGAAGT GCAGAAACCATAAAAATCAGAAAGAATATACAACGTTGCCCAATTGCTGCACCAAGAACC ACCTCAATTCATGTCTGTGGATCGCCACTCCACAATTTACCAGTTAACCGAGCTAGGGAA TCAGAAAATAACCAAAACCATATAGAAGGAAAAAGAGGGCAAATAG
Homology of Contig U35_42267 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |