barSeed - Barley Seed Development Database

Probe CUST_7823_PI390587928

Source Contig U35_30293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7823_PI390587928	Hv_44K_v2	AATTGGGTCTGACGTGCAAATTAGTCCCGAGAAACTGAGAGAAGAACAAGCAGCAGTGAA	336	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.675	0.899	2.134	2.196	1.056	1.025
Raw	19.822	40.351	88.155	136.077	24.807	25.882

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56655.2	1973	2e-24	1596 - 1655	100	60 / 60	minus	ABC11952
MLOC	MLOC_56655.1	2260	2e-24	1622 - 1681	100	60 / 60	minus	ABC11952
JLOC1	JLOC1_36667.1	2221	8e-25	504 - 563	100	60 / 60	plus
Harvest21	ABC30138	459	3e-25	337 - 396	100	60 / 60	plus
Harvest21	ABC11952	2104	3e-25	1631 - 1690	100	60 / 60	minus	ABC11952
Harvest35	U35_30293	459	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_19463	2104	3e-25	415 - 474	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_30293 459 Hv_44K_v2
GGCGTGACCCGTGAGCGGTGGTTGGCGCGGACAGAGGCGGGTAGCGCCGTAGGGGGATAG
GGAAGGTCCAAATTTTTCGGCGTTTGAGCAGTTCTAGGCTAGCATGGGCAAGTCCCCGGC
GAAGTGGATTAAGTCGGTGCTCCTCGGAAAGAAATCAACAAAGTCCACTTCCGTCAAGGC
AAAGGATTTGCCGAAGGCTGGAAACGGGAAGGAGCCTGAATTCTCTGATAATTCTCCCCT
GATCTCCGAGCCGGTACTTGTTAGCTCCCACAACAATGGAATTGCGTCAGAAATTTCCAA
CTTGCCCAATGGGAGCGCAATGGAAAACATGGTTAGAATTGGGTCTGACGTGCAAATTAG
TCCCGAGAAACTGAGAGAAGAACAAGCAGCAGTGAAGGCGCAAGCGGCTTTTCGAGGTTA
CCTGGCACGCAGGGCCTTCCGCGCATTGAAAGGCATCAT

Homology of Contig U35_30293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None