- Probe CUST_7816_PI390587928
- Source Contig U35_42270
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_7816_PI390587928 | Hv_44K_v2 | GGCCATGCCACGTGCAACTTACTGGTTAACTCTTACTGCAGTTATATTTGTGTTAAAAAA | 11 | GeneList: green MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.235 | 1.488 | 1.216 | 0.914 | 0.301 | 0.237 |
Raw | 413.045 | 780.874 | 557.418 | 657.747 | 76.593 | 65.168 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC37827 | 215 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37827 |
Harvest35 | U35_42270 | 215 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (215 bp)
>U35_42270 215 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACACAAATATAACTGCAGTAAGAGTTAACCAGTAAGTTGCAC GTGGCATGGCCAAGTAGACCATAAAAAGTTCCATTACTTCACTTCAAACAAATCTAACAG TGACANNTATAGCTGNNCTTGTAAGAAAATGAAAAGGGACAANCCTATATGTACCCAGAA TTCGACTANNACTGAGCTCNNCCTCTCCCATCTAT
Homology of Contig U35_42270 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |