barSeed - Barley Seed Development Database

Probe CUST_7813_PI390587928

Source Contig U35_42273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7813_PI390587928	Hv_44K_v2	GTGTCTCAAGGAAAAAGCCTTCTTGTCACTGGTCCAAATGGCAGTGGCAAAAGTTCCATT	596	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63684.4	4574	2e-24	848 - 907	100	60 / 60	minus	ABC09510 ABC14972 ABC14973
MLOC	MLOC_63684.3	5541	2e-24	868 - 927	100	60 / 60	minus	ABC09510 ABC14972 ABC14973
MLOC	MLOC_63684.1	5564	2e-24	1688 - 1747	100	60 / 60	minus	ABC09510 ABC14972 ABC14973
MLOC	MLOC_63684.2	5741	2e-24	1873 - 1932	100	60 / 60	minus	ABC09510 ABC14972 ABC14973
JLOC1	JLOC1_41740.1	5565	8e-25	3819 - 3878	100	60 / 60	plus
Harvest21	ABC37837	659	3e-25	597 - 656	100	60 / 60	plus
Harvest35	U35_42273	659	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_42273 659 Hv_44K_v2
GAAGAGCCGTTTCCCCTGATTTCGGCGATCTTTCAAACCAAGAACAAGAACTTGAAAGTT
CTTTCAGGTTCATGCACTCAAGACTGCGAACACATGCTGAGTCAATTGCTTTCTTTGGTG
GTGGATCAAGGGAAAGAGCTATGGTTGAAGCTAAGTTCGCAACTTTGCTTAACCACTCGA
AGATTCTATTGAGGAAAAGATGGCTTTATGGTATTTTTGATGATTTCGTGACGAAGCAGC
TGCCTCATAATGTGACGTGGGGATTGAGTTTGTTATATGCCTTGGAACACAAGGGGGACC
GAGCTTTGACTTCAGCGCAAGGAGAGTTAGCACATGCTCTGCGGTTCTTGGCATCTGTAG
TGTCACAAAGTTTCATAGCTTTTGGTGACATTCTCGAGTTGCATAAGAAATTCCTTGAAC
TTTCTGGTGGTGTCAATAGGATCTTTGAACTCGAGGAGCTTCTAAAGGCATCTCAAAGCA
ATGCTGTCATGCCATCAAATGTTATCAGTGTGCCATCTGAACAAACTATTTCCTTCCGTG
ATGTGGATATTGTGACCCCATCGCGAAAGCTACTGGCTAGCCAATTGTCTTGTGATGTGT
CTCAAGGAAAAAGCCTTCTTGTCACTGGTCCAAATGGCAGTGGCAAAAGTTCCATTTTC

Homology of Contig U35_42273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73530.1	1318	1e-126	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi2g61777.1	1326	2e-130
Arabidopsis v10	AT4G39850.3	1352	2e-101	\| Symbols: PXA1 \| peroxisomal ABC transporter 1 \| chr4:18489220-18496762 FORWARD LENGTH=1352