barSeed - Barley Seed Development Database

Probe CUST_7812_PI390587928

Source Contig U35_42275

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7812_PI390587928	Hv_44K_v2	CTATTTCGGAAGAAGCTAACAACCGAATGACACAGTTGGATCTGCAAAGTGCAGAGAGAA	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14341.1	1120	2e-24	140 - 199	100	60 / 60	plus	None
MLOC	AK366197	1687	7e-23	964 - 1023	98	59 / 60	plus	None
JLOC1	JLOC1_9791.1	956	8e-25	108 - 167	100	60 / 60	plus
Harvest21	ABC37847	660	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_42275	660	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_42275 660 Hv_44K_v2
GGGCGCAGTCGCTGTTTAAGAATGAGGCGATCGCCTTTCTGCTTCTCATCGGGGTATTTG
GTTTGGTGGAGGATGTTGGTGGCGCCGTCCAGGTGCTCGATCTGGTCGTGTCGATCTCCA
GCCGGGAGCGCGCCGTGGAGATCTTCCTCGGCCTTGGCCTCGACCTCGACAAGCATCTAC
CAGCTTCAACACCAAATAGTAGGTGGAGCTATTCCAGGGGATGCGTAATGGCTCTTAGGG
GATGCTAAACCTGTTTCCATGACTCTATGCTAATGGATGAACTGAACCTGTTTCATTCTT
GTTCTCACTCAGGCAATGATAAGCAAAGGCAAACAGCTCGATGCAGTCAAATTTATCCAA
GCTCTTAATTTAGTGCACAAGTATCCTCTATTGCCTATTCTCAGGTCATATGTGAATGAT
GCGAAAAATGCTGGGAACATGATCCGCATCAGGGGAGGCGGTCCTGCCTCTCAGGATGCA
GGTGATGCAAAAGAGCGTACATTGCTCGGAGCATTGCAGAAGTTCATTAAAGAACATAAT
CTAGAAGAATTGCCTATTTCGGAAGAAGCTAACAACCGAATGACACAGTTGGATCTGCAA
AGTGCAGAGAGAAAGCGAGCAGCCAATGCTGCAGCTGCAGCTGCTCGTGAAGTTAGTAAG

Homology of Contig U35_42275 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g71620.1	496	3e-69
Arabidopsis v10	None