barSeed - Barley Seed Development Database

Probe CUST_7808_PI390587928

Source Contig U35_42279

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7808_PI390587928	Hv_44K_v2	GCACCCCTGAAGTACCCGAGAAAATGGAAATTGAAGAGAAAGTTGAAGGAAAAGATACCG	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362898	3295	2e-24	1404 - 1463	100	60 / 60	plus	None
MLOC	MLOC_60197.1	2280	2e-24	1010 - 1069	100	60 / 60	plus	None
MLOC	MLOC_60197.2	2939	2e-24	1010 - 1069	100	60 / 60	plus	None
JLOC1	JLOC1_39231.3	2987	8e-25	1012 - 1071	100	60 / 60	plus
JLOC1	JLOC1_39231.2	2982	8e-25	1012 - 1071	100	60 / 60	plus
JLOC1	JLOC1_39231.1	2226	8e-25	1012 - 1071	100	60 / 60	plus
Harvest21	ABC37851	644	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_42279	644	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_42279 644 Hv_44K_v2
GGCCAAGTGATTCTCTTAATGAGGAGAAAGCTTCTCTCATTGAGAAGCTGTTTAAATTTG
AACCGATTCAGTCATACATGATTCCCTTACCAAATAAAGGGGATGTGGAAATTCCAGTGC
CTCTGCCTAGCTTGCTTCCTGATCCTGTTCTAGTGGAAGATGTAATTGCAGCAGCTGAGC
CTTCCGTTGAGTACCACTGTAACTCCTGTTCAGTTGATTGCTCGGGCAAGCGCTATCACT
GCCGGACCCAGGCAGATTTTGACCTGTGTTCTAACTGCTACAACGAAGAAAAATTCGATC
CAGGCATGTCCAAAACAGACTTCATCCTCATGGATTCCACAGAAGTTTCTGGTGCTCGTG
GTACTAGCTGGACTGATGAGGAGACATTGCTTCTCTTAGAAGCTCTGGAAATTTTTGGTG
GAAAATGGACTGAGATTGCAGAACATGTTGCTACAAAAACAAAAACACAGTGTATGTTAC
ACTTTCTTCAAATGCAAATTGAGGATCACTTCCATGATGGTGATGATATTCACCAAAATA
TCCAGGAAAACACAGAGCAAGCCTTGGCAGAAAAAGGCACCCCTGAAGTACCCGAGAAAA
TGGAAATTGAAGAGAAAGTTGAAGGAAAAGATACCGAGGATGAG

Homology of Contig U35_42279 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51220.1	915	5e-97	protein\|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed
Brachypodium v1_2	Bradi1g10370.3	914	4e-108
Arabidopsis v10	None