- Probe CUST_7807_PI390587928
- Source Contig U35_42280
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7807_PI390587928 | Hv_44K_v2 | ATAGATCCATCAAATAAATCAGCCAAGGTGATATCACAGGGATCTGCTGACATGCTTCCC | 447 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.478 | 0.502 | 1.021 | 1.504 | 1.110 | 1.165 |
| Raw | 25.034 | 37.144 | 73.054 | 170.898 | 43.085 | 50.420 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_14139.3 | 1596 | 2e-24 | 592 - 651 | 100 | 60 / 60 | plus | ABC06243 |
| MLOC | MLOC_14139.5 | 1465 | 2e-24 | 761 - 820 | 100 | 60 / 60 | minus | ABC06243 |
| MLOC | MLOC_14139.1 | 1658 | 2e-24 | 973 - 1032 | 100 | 60 / 60 | minus | ABC06243 |
| MLOC | MLOC_14139.4 | 1576 | 2e-24 | 922 - 981 | 100 | 60 / 60 | minus | ABC06243 |
| MLOC | MLOC_14139.2 | 1650 | 2e-24 | 965 - 1024 | 100 | 60 / 60 | minus | ABC06243 |
| JLOC1 | JLOC1_9638.3 | 1887 | 8e-25 | 627 - 686 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9638.2 | 1883 | 8e-25 | 627 - 686 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9638.1 | 1834 | 8e-25 | 570 - 629 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37855 | 507 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06243 | 1783 | 3e-25 | 526 - 585 | 100 | 60 / 60 | plus | ABC06243 |
| Harvest35 | U35_42280 | 507 | 3e-25 | 448 - 507 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2511 | 1783 | 3e-25 | 526 - 585 | 100 | 60 / 60 | plus |
Contig Sequence (507 bp)
>U35_42280 507 Hv_44K_v2 GGCTGCAGAGAACGAGTACAGGTGCACCTGATCCGGCTGCTGCCGGGGGAGAACGAGCTC GTGTGCGACGGGCTGTTCTACCATCCCAACGAGATCTGGGACCTCAAGTCCTGCCCCTTC GACCACAGGCTATTCTCCACGGTCTACACCTCTGGTAGAAATGCTCCACTCTTCTCCGAA TTCTCCTATTTTTTATTTGATGCATTGAGCATTTTGGGATGCAATTCTAAAGCGTCTCCA TGTGTTGCAATGTGAATGTCAGGTGAGGGTTATGGCGCGTCAGTTTGGAAGATCCCGGAG CTGTATGGGCAGTCCAACTCACCGCAGCTTGAGCAGCTTTTCGCGCTCGATGACCACACG GACAAAATAAGATGTGTTCTCTGGTGGCCACTGGGGAAGCATGATAAGTTAATTAGCATC GATGACAGAAACATTTTTCTCTGGAACATAGATCCATCAAATAAATCAGCCAAGGTGATA TCACAGGGATCTGCTGACATGCTTCCC
Homology of Contig U35_42280 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g44010.4 | 352 | 8e-74 | protein|WD domain, G-beta repeat domain containing protein, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |