barSeed - Barley Seed Development Database

Probe CUST_7805_PI390587928

Source Contig U35_42282

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7805_PI390587928	Hv_44K_v2	ACCATGTTGGTTACCTAGGTTATGTTCCAAAGCTGGTTGCAGCTATGGCTTATGAGGGAA	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5314.1	3180	2e-24	1986 - 2045	100	60 / 60	plus	ABC09751
JLOC1	JLOC1_3409.1	3407	8e-25	2215 - 2274	100	60 / 60	plus
Harvest21	ABC37858	646	3e-25	430 - 489	100	60 / 60	plus
Harvest35	U35_42282	646	3e-25	430 - 489	100	60 / 60	plus

Contig Sequence (646 bp)

>U35_42282 646 Hv_44K_v2
GCTGCAATGGCAGCTTCTCTTTCTGCTCAGCTGTCTACCATGGCGGCAGACCTTTACCAA
GAGCAGATGAAAGGACGTCTTGTTGATTGGGATGTGCCGGAACAAGCACCTGGCCAACAT
GTAATGAAGGATGAACCACAGGTAATAGTGCTTGTTCAACTATTATTCTGGTATCTGCAT
TTCATAACATTGTCTTAGGTATTATCATGCTCTGCAAATTTCAGGTTGGTGGAATATATG
TGAGACTTTTCCTAAAGGATCCCAAGTTTCCACTGAGAAACCCTAAAAGATTCCTTGAAG
GGCTACTAGATCAATATGTTTCTTCAGTTGCTGCTACCCACTATGAAGCAAATGCTGTTG
ATCCAGAACTCCCTTTGCTGCTTTCTGCCGCACTTGTTTCCTTGTTGCGTGTTCATCCGG
CACTTGCAGACCATGTTGGTTACCTAGGTTATGTTCCAAAGCTGGTTGCAGCTATGGCTT
ATGAGGGAAGAAGGGAGACTATGGCATCTGGACAGGACACAAGTAGAGCACAAGCAGAAC
CTGTTGAGCACGATAACTCTGATGGTGTCCCTGAGACCACTGTGCAGACTCCACAAGAGA
GGGTTCGCCTTAGTTGTTTGCGAGTACTACATCAGCTGGCGTCTAG

Homology of Contig U35_42282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42439.1	2633	8e-72	protein\|heat shock protein DnaJ, putative, expressed
Brachypodium v1_2	Bradi3g34450.1	2639	3e-79
Arabidopsis v10	AT2G26890.1	2554	7e-57	\| Symbols: GRV2, KAM2 \| DNAJ heat shock N-terminal domain-containing protein \| chr2:11462327-11473841 REVERSE LENGTH=2554